Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDB3O75112 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LDB3O75112 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.07■□□□□ 0.48
LDB3O75112 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDB3O75112 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDB3O75112 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.07■□□□□ 0.48
LDB3O75112 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
LDB3O75112 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
LDB3O75112 TEX21P-204ENST00000641479 1693 ntBASIC18.07■□□□□ 0.48
LDB3O75112 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDB3O75112 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDB3O75112 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LDB3O75112 AL355355.2-201ENST00000442321 338 ntBASIC18.07■□□□□ 0.48
LDB3O75112 NUDT16P1-203ENST00000513809 620 ntBASIC18.07■□□□□ 0.48
LDB3O75112 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.07■□□□□ 0.48
LDB3O75112 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.07■□□□□ 0.48
LDB3O75112 AC026471.5-201ENST00000615068 467 ntBASIC18.07■□□□□ 0.48
LDB3O75112 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDB3O75112 KRT8P41-201ENST00000533985 1514 ntBASIC18.07■□□□□ 0.48
LDB3O75112 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
LDB3O75112 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LDB3O75112 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.07■□□□□ 0.48
LDB3O75112 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LDB3O75112 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
LDB3O75112 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LDB3O75112 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDB3O75112 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDB3O75112 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDB3O75112 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDB3O75112 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
LDB3O75112 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
LDB3O75112 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDB3O75112 RCC2P6-201ENST00000526625 1557 ntBASIC18.06■□□□□ 0.48
LDB3O75112 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
LDB3O75112 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.06■□□□□ 0.48
LDB3O75112 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.06■□□□□ 0.48
LDB3O75112 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.06■□□□□ 0.48
LDB3O75112 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.06■□□□□ 0.48
LDB3O75112 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
LDB3O75112 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.06■□□□□ 0.48
LDB3O75112 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDB3O75112 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDB3O75112 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LDB3O75112 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDB3O75112 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
LDB3O75112 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.06■□□□□ 0.48
LDB3O75112 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.05■□□□□ 0.48
LDB3O75112 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDB3O75112 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.05■□□□□ 0.48
LDB3O75112 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDB3O75112 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LDB3O75112 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
LDB3O75112 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LDB3O75112 AL596275.1-201ENST00000423464 877 ntBASIC18.05■□□□□ 0.48
LDB3O75112 AC011506.1-201ENST00000474329 610 ntBASIC18.05■□□□□ 0.48
LDB3O75112 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.05■□□□□ 0.48
LDB3O75112 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LDB3O75112 AC026271.3-201ENST00000571884 352 ntBASIC18.05■□□□□ 0.48
LDB3O75112 MIR4497-201ENST00000583208 89 ntBASIC18.05■□□□□ 0.48
LDB3O75112 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.05■□□□□ 0.48
LDB3O75112 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.05■□□□□ 0.48
LDB3O75112 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.05■□□□□ 0.48
LDB3O75112 MIR6786-201ENST00000616843 113 ntBASIC18.05■□□□□ 0.48
LDB3O75112 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDB3O75112 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDB3O75112 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDB3O75112 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.05■□□□□ 0.48
LDB3O75112 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
LDB3O75112 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.05■□□□□ 0.48
LDB3O75112 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDB3O75112 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDB3O75112 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDB3O75112 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDB3O75112 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LDB3O75112 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LDB3O75112 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDB3O75112 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
LDB3O75112 AC120498.9-201ENST00000339021 3867 ntBASIC18.04■□□□□ 0.48
LDB3O75112 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
LDB3O75112 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDB3O75112 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDB3O75112 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LDB3O75112 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDB3O75112 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LDB3O75112 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.04■□□□□ 0.48
LDB3O75112 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDB3O75112 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
LDB3O75112 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
LDB3O75112 AC004951.3-201ENST00000418645 1148 ntBASIC18.04■□□□□ 0.48
LDB3O75112 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LDB3O75112 B3GAT3P1-201ENST00000471720 806 ntBASIC18.04■□□□□ 0.48
LDB3O75112 AP003071.4-201ENST00000562276 1284 ntBASIC18.04■□□□□ 0.48
LDB3O75112 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.04■□□□□ 0.48
LDB3O75112 AC011298.2-201ENST00000617989 482 ntBASIC18.04■□□□□ 0.48
LDB3O75112 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.04■□□□□ 0.48
LDB3O75112 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
LDB3O75112 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.04■□□□□ 0.48
LDB3O75112 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LDB3O75112 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LDB3O75112 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms