Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SDCBPO00560 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDCBPO00560 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDCBPO00560 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDCBPO00560 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDCBPO00560 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SDCBPO00560 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SDCBPO00560 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SDCBPO00560 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.32■□□□□ 0.2
SDCBPO00560 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SDCBPO00560 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC16.32■□□□□ 0.2
SDCBPO00560 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SDCBPO00560 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC16.32■□□□□ 0.2
SDCBPO00560 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDCBPO00560 TK2-208ENST00000545043 1120 ntTSL 2 BASIC16.32■□□□□ 0.2
SDCBPO00560 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC16.32■□□□□ 0.2
SDCBPO00560 MIR4758-201ENST00000577688 71 ntBASIC16.32■□□□□ 0.2
SDCBPO00560 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC16.32■□□□□ 0.2
SDCBPO00560 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SDCBPO00560 GXYLT1P5-201ENST00000614548 1189 ntBASIC16.32■□□□□ 0.2
SDCBPO00560 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC16.32■□□□□ 0.2
SDCBPO00560 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDCBPO00560 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SDCBPO00560 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
SDCBPO00560 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SDCBPO00560 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
SDCBPO00560 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDCBPO00560 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SDCBPO00560 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SDCBPO00560 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC16.31■□□□□ 0.2
SDCBPO00560 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDCBPO00560 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SDCBPO00560 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDCBPO00560 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDCBPO00560 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC16.31■□□□□ 0.2
SDCBPO00560 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC16.31■□□□□ 0.2
SDCBPO00560 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SDCBPO00560 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SDCBPO00560 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SDCBPO00560 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDCBPO00560 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDCBPO00560 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SDCBPO00560 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDCBPO00560 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDCBPO00560 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDCBPO00560 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SDCBPO00560 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SDCBPO00560 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SDCBPO00560 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SDCBPO00560 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SDCBPO00560 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC16.3■□□□□ 0.2
SDCBPO00560 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC16.3■□□□□ 0.2
SDCBPO00560 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
SDCBPO00560 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 GUSBP6-202ENST00000438529 1198 ntBASIC16.3■□□□□ 0.2
SDCBPO00560 AC091874.3-201ENST00000512672 1195 ntBASIC16.3■□□□□ 0.2
SDCBPO00560 BET1L-207ENST00000529614 560 ntTSL 5 BASIC16.3■□□□□ 0.2
SDCBPO00560 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC16.3■□□□□ 0.2
SDCBPO00560 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC16.3■□□□□ 0.2
SDCBPO00560 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC16.3■□□□□ 0.2
SDCBPO00560 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC16.3■□□□□ 0.2
SDCBPO00560 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 AC141586.3-201ENST00000562166 1838 ntBASIC16.3■□□□□ 0.2
SDCBPO00560 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SDCBPO00560 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC16.3■□□□□ 0.2
SDCBPO00560 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SDCBPO00560 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.3■□□□□ 0.2
SDCBPO00560 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC16.3■□□□□ 0.2
SDCBPO00560 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SDCBPO00560 GGT1-206ENST00000404223 952 ntTSL 2 BASIC16.29■□□□□ 0.2
SDCBPO00560 PPP1R14BP2-201ENST00000426284 444 ntBASIC16.29■□□□□ 0.2
SDCBPO00560 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC16.29■□□□□ 0.2
SDCBPO00560 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SDCBPO00560 MAP2K4P1-201ENST00000438453 1195 ntBASIC16.29■□□□□ 0.2
SDCBPO00560 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC16.29■□□□□ 0.2
SDCBPO00560 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms