Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 HSD52-202ENST00000436225 772 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 ELOCP13-201ENST00000443934 329 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 MTCO2P25-201ENST00000447065 681 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AL645939.1-201ENST00000453429 797 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 RPL37P6-202ENST00000464216 403 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AC087385.1-201ENST00000475062 312 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 RPS6P4-201ENST00000494693 758 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 RNF138P1-201ENST00000502765 546 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 BTF3L4P4-201ENST00000506381 449 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 VWA8P1-201ENST00000510889 176 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AC008837.2-201ENST00000513076 418 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AC104057.1-201ENST00000515547 497 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 IGLVIV-53-201ENST00000520107 367 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AC005832.3-201ENST00000537929 631 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AC022662.1-201ENST00000580252 331 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AC061975.8-201ENST00000587058 721 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 DUXAP3-201ENST00000603616 594 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 BRDTP1-201ENST00000605735 677 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AC007349.4-201ENST00000608114 532 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AC121761.2-201ENST00000617300 689 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 AC109809.1-201ENST00000619665 545 ntBASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.04□□□□□ -1.76
ZNF541Q9H0D2 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 ZNF876P-202ENST00000398732 1485 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 FTLP6-201ENST00000355274 422 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 RNU6-251P-201ENST00000363235 104 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 RNA5SP42-201ENST00000364278 115 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 RNA5SP235-201ENST00000365411 114 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 RNU6-921P-201ENST00000384361 107 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 MIR124-3-201ENST00000384866 87 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 AL139095.1-201ENST00000404326 391 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 RPL23AP48-201ENST00000406913 488 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 RPS3AP9-201ENST00000417027 792 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 AC092634.6-201ENST00000418558 192 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 ZNF736P8Y-201ENST00000451913 669 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 RFC5P1-201ENST00000454419 874 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 MTCO3P2-201ENST00000457365 171 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 AC116353.3-201ENST00000511215 249 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 APOOP4-201ENST00000513530 597 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 AC026801.2-201ENST00000515352 425 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 AP003117.2-201ENST00000606010 545 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 AC097478.2-201ENST00000610572 514 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 AC087683.2-201ENST00000611384 326 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 USP8P1-201ENST00000494673 3183 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 OR11H5P-202ENST00000641612 1325 ntBASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
ZNF541Q9H0D2 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.03□□□□□ -1.77
ZNF541Q9H0D2 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.77
ZNF541Q9H0D2 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 RNU5D-1-201ENST00000363299 116 ntBASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 RN7SKP44-201ENST00000363602 316 ntBASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 SUGT1P1-201ENST00000379514 476 ntBASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 MIR1250-201ENST00000408098 113 ntBASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 HMGB1P49-201ENST00000418882 569 ntBASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 AL353705.1-201ENST00000433468 480 ntBASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 RPL23AP16-201ENST00000441715 421 ntBASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 Z73417.1-201ENST00000447373 778 ntBASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 MTCO1P48-201ENST00000448024 1096 ntBASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 ANP32BP2-201ENST00000454525 545 ntBASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 NECAP1P2-201ENST00000455668 727 ntBASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 MTND1P16-201ENST00000465177 898 ntBASIC4.02□□□□□ -1.77
ZNF541Q9H0D2 AC091951.3-201ENST00000504093 246 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms