Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AC108475.1-201ENST00000507880 950 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 RNU6-875P-201ENST00000516488 106 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 RNU6-1073P-201ENST00000517182 106 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 MRPS16P1-201ENST00000523462 412 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AC008055.1-201ENST00000547032 609 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 IMMP1LP3-201ENST00000604197 224 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AL355810.1-201ENST00000614629 552 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AL359547.2-201ENST00000615810 418 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AC100810.6-201ENST00000638068 285 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AC068254.2-201ENST00000623938 3577 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 TPTE2P4-201ENST00000258589 1605 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 QRSL1P1-201ENST00000400977 1540 ntBASIC4.31□□□□□ -1.72
CLRN3Q8NCR9 AC063976.2-201ENST00000425667 3556 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 RN7SKP184-201ENST00000362348 333 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 RNA5SP189-201ENST00000364920 115 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 RNU4-66P-201ENST00000365199 138 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 RNU1-84P-201ENST00000365447 164 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 CRP-204ENST00000368112 787 ntTSL 2 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 RNU6-767P-201ENST00000384132 107 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 MIR514A2-201ENST00000385131 88 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 MIR514A3-201ENST00000385132 88 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 MIR130A-201ENST00000385274 89 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 EEF1A1P40-201ENST00000412883 573 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 RPS7P8-201ENST00000418311 581 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 PDSS1P1-201ENST00000422953 1114 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 EI24P4-201ENST00000423683 1078 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 RPL7P46-201ENST00000425129 740 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC007679.3-201ENST00000434035 414 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AL161722.2-201ENST00000434731 981 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AL356121.1-201ENST00000442911 156 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC133473.1-201ENST00000455173 299 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 MTND1P11-201ENST00000456661 876 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AP000873.1-201ENST00000463987 400 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 RN7SL413P-201ENST00000482700 297 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 MRPS33P2-201ENST00000507850 322 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC005921.1-201ENST00000510589 286 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AL359273.1-201ENST00000510918 627 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 KHDC1P1-201ENST00000511053 508 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 RNU6-507P-201ENST00000516045 100 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 RN7SKP60-201ENST00000516985 239 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 RNU6-685P-201ENST00000517088 95 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 MTND4P7-201ENST00000523876 130 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC007424.1-203ENST00000554613 687 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 FGF7P1-201ENST00000582820 288 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC007619.2-201ENST00000605743 379 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC009994.1-201ENST00000606889 253 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC079395.2-201ENST00000610982 737 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AL589743.6-201ENST00000611025 117 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC073869.8-201ENST00000641806 335 ntBASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.3□□□□□ -1.72
CLRN3Q8NCR9 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms