Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AL391987.1-201ENST00000441025 200 ntBASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 RPL21P8-201ENST00000465083 535 ntBASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 AC015911.1-201ENST00000495111 156 ntBASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 AC008638.1-201ENST00000506035 866 ntBASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 AC104806.1-201ENST00000508720 308 ntBASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 RNA5SP362-201ENST00000516048 118 ntBASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 RNU6-764P-201ENST00000516396 105 ntBASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 RNU6-64P-201ENST00000517119 105 ntBASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 AC027026.1-201ENST00000532323 742 ntBASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 MIR5583-1-201ENST00000580941 59 ntBASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 AL355598.1-201ENST00000604169 202 ntBASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 AL442067.1-201ENST00000613261 223 ntBASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 MIR8080-201ENST00000622224 89 ntBASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 IQCB2P-201ENST00000401788 1633 ntBASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 AL137003.2-201ENST00000606924 2538 ntBASIC5.12□□□□□ -1.59
UBE3DQ7Z6J8 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AC008758.3-201ENST00000507003 1829 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AC006484.1-201ENST00000435086 1884 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AC007529.1-201ENST00000418574 2178 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 RNA5SP132-201ENST00000364725 118 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 SNORD51-201ENST00000384320 80 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 RNU6-310P-201ENST00000384655 107 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 U3.29-201ENST00000391296 212 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 PDSS1P1-201ENST00000422953 1114 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 H2AFZP6-201ENST00000444403 394 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AC090804.1-201ENST00000448870 490 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 RN7SL174P-201ENST00000475578 289 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AC008526.1-201ENST00000509149 338 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 RNU6-1016P-201ENST00000516689 94 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 RNA5SP373-201ENST00000517271 95 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AC126177.5-201ENST00000549599 178 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AL161670.1-201ENST00000554348 137 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AL138726.1-201ENST00000614873 333 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AC109583.2-201ENST00000617367 129 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AC010378.1-201ENST00000619270 362 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 ZNF519P1-201ENST00000449011 1626 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 AL078621.3-201ENST00000623707 2042 ntBASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
UBE3DQ7Z6J8 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
UBE3DQ7Z6J8 ZNF807-201ENST00000328088 1707 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 164.9 ms