Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC4.75□□□□□ -1.65
USP39Q53GS9 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.75□□□□□ -1.65
USP39Q53GS9 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC4.75□□□□□ -1.65
USP39Q53GS9 SNORA48.10-201ENST00000516965 160 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 AC134698.5-201ENST00000519444 336 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 HSPA8P13-201ENST00000523715 472 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 AP000790.1-201ENST00000528891 737 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 AP001781.1-201ENST00000530977 207 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.75□□□□□ -1.65
USP39Q53GS9 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.75□□□□□ -1.65
USP39Q53GS9 HMGB3P26-201ENST00000560051 582 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 MIR3160-1-201ENST00000577972 85 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 MIR3939-201ENST00000582614 106 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC4.75□□□□□ -1.65
USP39Q53GS9 VN1R80P-201ENST00000597126 338 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.75□□□□□ -1.65
USP39Q53GS9 AL162413.1-201ENST00000603198 110 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 AL133338.2-201ENST00000604292 736 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 AC011816.2-201ENST00000607089 556 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 AC023043.4-201ENST00000612081 449 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.75□□□□□ -1.65
USP39Q53GS9 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.75□□□□□ -1.65
USP39Q53GS9 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.75□□□□□ -1.65
USP39Q53GS9 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
USP39Q53GS9 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
USP39Q53GS9 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.75□□□□□ -1.65
USP39Q53GS9 AC022893.2-201ENST00000564832 3296 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
USP39Q53GS9 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
USP39Q53GS9 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
USP39Q53GS9 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
USP39Q53GS9 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
USP39Q53GS9 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.74□□□□□ -1.65
USP39Q53GS9 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.74□□□□□ -1.65
USP39Q53GS9 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
USP39Q53GS9 SNORA57.1-201ENST00000391227 145 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.74□□□□□ -1.65
USP39Q53GS9 AC004987.3-201ENST00000413879 771 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.74□□□□□ -1.65
USP39Q53GS9 AL445669.1-201ENST00000426743 755 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 SAR1AP4-201ENST00000429225 591 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AL451139.1-201ENST00000434718 346 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC4.74□□□□□ -1.65
USP39Q53GS9 ACTR3P2-201ENST00000439585 1257 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC4.74□□□□□ -1.65
USP39Q53GS9 RPL23AP20-201ENST00000447965 421 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC4.74□□□□□ -1.65
USP39Q53GS9 Z82190.1-201ENST00000454534 490 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC4.74□□□□□ -1.65
USP39Q53GS9 RNA5SP103-201ENST00000459503 118 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 MTND1P3-201ENST00000484956 952 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC4.74□□□□□ -1.65
USP39Q53GS9 AC093809.1-201ENST00000509155 340 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC4.74□□□□□ -1.65
USP39Q53GS9 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC4.74□□□□□ -1.65
USP39Q53GS9 SNORD116-26-201ENST00000516006 96 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AC027309.2-201ENST00000520566 192 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC4.74□□□□□ -1.65
USP39Q53GS9 AC068587.4-201ENST00000533893 186 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.74□□□□□ -1.65
USP39Q53GS9 AL845331.3-202ENST00000562856 261 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AC007151.1-201ENST00000572774 483 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.74□□□□□ -1.65
USP39Q53GS9 MIR4716-201ENST00000579628 84 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 MIR3682-201ENST00000581338 84 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.74□□□□□ -1.65
USP39Q53GS9 AC018638.8-201ENST00000588755 281 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AC008782.1-201ENST00000603386 430 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AC012507.3-201ENST00000603556 477 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 BCRP9-201ENST00000605312 388 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AC116312.1-201ENST00000606841 314 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AC231657.1-201ENST00000624313 397 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AC011944.2-201ENST00000624440 683 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.74□□□□□ -1.65
USP39Q53GS9 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
USP39Q53GS9 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
USP39Q53GS9 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.74□□□□□ -1.65
USP39Q53GS9 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
USP39Q53GS9 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
USP39Q53GS9 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
USP39Q53GS9 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.74□□□□□ -1.65
USP39Q53GS9 AC024560.2-201ENST00000507981 1497 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 AL118496.1-201ENST00000440201 1812 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
USP39Q53GS9 AC108467.2-201ENST00000617640 1597 ntBASIC4.74□□□□□ -1.65
USP39Q53GS9 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
USP39Q53GS9 AC093311.1-201ENST00000506586 2021 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
USP39Q53GS9 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
USP39Q53GS9 AP001273.1-201ENST00000624493 3152 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
USP39Q53GS9 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
USP39Q53GS9 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
USP39Q53GS9 AC074029.4-201ENST00000624796 1859 ntBASIC4.73□□□□□ -1.65
USP39Q53GS9 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.73□□□□□ -1.65
USP39Q53GS9 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
USP39Q53GS9 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.73□□□□□ -1.65
USP39Q53GS9 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.73□□□□□ -1.65
USP39Q53GS9 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
USP39Q53GS9 RNA5SP388-201ENST00000362584 119 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms