Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC079168.2-201ENST00000453977 416 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SF3A1Q15459 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SF3A1Q15459 KCTD9P5-201ENST00000504141 1170 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 AC021146.1-201ENST00000511202 716 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 CDV3-208ENST00000511392 554 ntTSL 5 BASIC5.39□□□□□ -1.55
SF3A1Q15459 AC010493.1-201ENST00000513479 292 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 AC114797.1-201ENST00000514003 728 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC5.39□□□□□ -1.55
SF3A1Q15459 DEFB108D-201ENST00000527787 222 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 AC021006.3-201ENST00000530771 192 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC5.39□□□□□ -1.55
SF3A1Q15459 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC5.39□□□□□ -1.55
SF3A1Q15459 AC015912.2-201ENST00000571053 181 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.39□□□□□ -1.55
SF3A1Q15459 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC5.39□□□□□ -1.55
SF3A1Q15459 AL450472.3-201ENST00000615578 367 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SF3A1Q15459 AL049536.1-201ENST00000625043 744 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC5.39□□□□□ -1.55
SF3A1Q15459 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SF3A1Q15459 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.39□□□□□ -1.55
SF3A1Q15459 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
SF3A1Q15459 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SF3A1Q15459 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SF3A1Q15459 AL442639.1-201ENST00000625030 1899 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SF3A1Q15459 AC015813.6-201ENST00000624409 5808 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
SF3A1Q15459 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SF3A1Q15459 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SF3A1Q15459 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.38□□□□□ -1.55
SF3A1Q15459 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.38□□□□□ -1.55
SF3A1Q15459 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SF3A1Q15459 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
SF3A1Q15459 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.38□□□□□ -1.55
SF3A1Q15459 Y_RNA.6-201ENST00000362350 114 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.38□□□□□ -1.55
SF3A1Q15459 RN7SKP159-201ENST00000410657 292 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 UBE2FP1-201ENST00000416536 447 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 PIGFP2-201ENST00000421400 651 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC5.38□□□□□ -1.55
SF3A1Q15459 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC5.38□□□□□ -1.55
SF3A1Q15459 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC5.38□□□□□ -1.55
SF3A1Q15459 AC004866.2-201ENST00000438285 481 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC5.38□□□□□ -1.55
SF3A1Q15459 RPL21P89-201ENST00000444021 467 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 AL136380.1-201ENST00000447970 162 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 AL359385.1-201ENST00000456509 365 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 RPS5P7-201ENST00000456664 608 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 AP000926.1-201ENST00000479573 241 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 UBE2Q2P9-201ENST00000490086 202 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 AK3P4-201ENST00000504283 583 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC5.38□□□□□ -1.55
SF3A1Q15459 RNA5SP337-201ENST00000517007 109 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC5.38□□□□□ -1.55
SF3A1Q15459 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC5.38□□□□□ -1.55
SF3A1Q15459 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC5.38□□□□□ -1.55
SF3A1Q15459 AC087883.1-201ENST00000551882 391 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.38□□□□□ -1.55
SF3A1Q15459 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC5.38□□□□□ -1.55
SF3A1Q15459 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.38□□□□□ -1.55
SF3A1Q15459 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC5.38□□□□□ -1.55
SF3A1Q15459 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC5.38□□□□□ -1.55
SF3A1Q15459 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.38□□□□□ -1.55
SF3A1Q15459 AC011487.3-201ENST00000593607 453 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.38□□□□□ -1.55
SF3A1Q15459 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.38□□□□□ -1.55
SF3A1Q15459 AL353748.2-201ENST00000622148 471 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 AC138649.5-201ENST00000637456 137 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 AC068137.3-201ENST00000639191 341 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 AC073869.6-201ENST00000640656 341 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 AC108751.5-201ENST00000492880 1336 ntBASIC5.38□□□□□ -1.55
SF3A1Q15459 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC5.38□□□□□ -1.55
SF3A1Q15459 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SF3A1Q15459 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SF3A1Q15459 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
SF3A1Q15459 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SF3A1Q15459 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
SF3A1Q15459 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.37□□□□□ -1.55
SF3A1Q15459 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC5.37□□□□□ -1.55
SF3A1Q15459 AC139713.2-214ENST00000642059 1811 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
SF3A1Q15459 DDX10P1-201ENST00000448545 1933 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SF3A1Q15459 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SF3A1Q15459 OR1S2-201ENST00000302592 978 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SF3A1Q15459 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SF3A1Q15459 RNA5SP191-201ENST00000362585 102 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 RNU6-517P-201ENST00000384362 110 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 GSTA9P-201ENST00000406231 611 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.37□□□□□ -1.55
SF3A1Q15459 AC137499.1-201ENST00000427602 88 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 AC133104.1-201ENST00000429100 218 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC5.37□□□□□ -1.55
SF3A1Q15459 RPL21P112-201ENST00000434403 463 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 AL451074.3-201ENST00000437709 472 ntBASIC5.37□□□□□ -1.55
SF3A1Q15459 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms