Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 USP9YP12-201ENST00000450481 570 ntBASIC5.14□□□□□ -1.59
MRE11P49959 MTND3P10-201ENST00000450967 341 ntBASIC5.14□□□□□ -1.59
MRE11P49959 ELOCP23-201ENST00000452014 332 ntBASIC5.14□□□□□ -1.59
MRE11P49959 NDUFA5P7-201ENST00000452914 242 ntBASIC5.14□□□□□ -1.59
MRE11P49959 AC008481.1-201ENST00000463278 396 ntBASIC5.14□□□□□ -1.59
MRE11P49959 AC011276.1-201ENST00000469688 323 ntBASIC5.14□□□□□ -1.59
MRE11P49959 RN7SL585P-201ENST00000470538 280 ntBASIC5.14□□□□□ -1.59
MRE11P49959 AC025554.1-201ENST00000505641 188 ntBASIC5.14□□□□□ -1.59
MRE11P49959 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC5.14□□□□□ -1.59
MRE11P49959 AC025674.1-201ENST00000507074 324 ntBASIC5.14□□□□□ -1.59
MRE11P49959 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC5.14□□□□□ -1.59
MRE11P49959 RN7SKP276-201ENST00000516242 268 ntBASIC5.14□□□□□ -1.59
MRE11P49959 RNU6-430P-201ENST00000517078 107 ntBASIC5.14□□□□□ -1.59
MRE11P49959 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC5.14□□□□□ -1.59
MRE11P49959 LY96-202ENST00000518893 430 ntTSL 3 BASIC5.14□□□□□ -1.59
MRE11P49959 IGKV2-36-201ENST00000519999 223 ntBASIC5.14□□□□□ -1.59
MRE11P49959 AC008562.1-201ENST00000521763 330 ntBASIC5.14□□□□□ -1.59
MRE11P49959 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC5.14□□□□□ -1.59
MRE11P49959 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
MRE11P49959 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC5.14□□□□□ -1.59
MRE11P49959 AC141257.3-201ENST00000572906 215 ntBASIC5.14□□□□□ -1.59
MRE11P49959 AC103710.4-201ENST00000609301 899 ntBASIC5.14□□□□□ -1.59
MRE11P49959 AC007497.1-201ENST00000610421 561 ntBASIC5.14□□□□□ -1.59
MRE11P49959 AC008250.2-201ENST00000615261 205 ntBASIC5.14□□□□□ -1.59
MRE11P49959 AC063943.3-201ENST00000615562 356 ntBASIC5.14□□□□□ -1.59
MRE11P49959 AC108479.2-201ENST00000617314 601 ntBASIC5.14□□□□□ -1.59
MRE11P49959 AC231657.1-201ENST00000624313 397 ntBASIC5.14□□□□□ -1.59
MRE11P49959 CR381572.2-201ENST00000624852 397 ntBASIC5.14□□□□□ -1.59
MRE11P49959 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
MRE11P49959 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
MRE11P49959 AL391684.1-202ENST00000641293 1636 ntBASIC5.14□□□□□ -1.59
MRE11P49959 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
MRE11P49959 MTND4P29-201ENST00000503122 1372 ntBASIC5.14□□□□□ -1.59
MRE11P49959 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
MRE11P49959 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
MRE11P49959 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
MRE11P49959 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
MRE11P49959 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
MRE11P49959 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
MRE11P49959 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
MRE11P49959 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
MRE11P49959 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
MRE11P49959 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
MRE11P49959 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
MRE11P49959 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
MRE11P49959 AL512646.1-201ENST00000269395 1077 ntBASIC5.13□□□□□ -1.59
MRE11P49959 SNORA71.3-201ENST00000362582 128 ntBASIC5.13□□□□□ -1.59
MRE11P49959 Y_RNA.372-201ENST00000365599 102 ntBASIC5.13□□□□□ -1.59
MRE11P49959 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
MRE11P49959 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC5.13□□□□□ -1.59
MRE11P49959 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
MRE11P49959 AC009965.2-201ENST00000425328 970 ntBASIC5.13□□□□□ -1.59
MRE11P49959 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC5.13□□□□□ -1.59
MRE11P49959 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.13□□□□□ -1.59
MRE11P49959 ZYG11AP1-201ENST00000430329 837 ntBASIC5.13□□□□□ -1.59
MRE11P49959 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC5.13□□□□□ -1.59
MRE11P49959 USP12PX-201ENST00000432383 1057 ntBASIC5.13□□□□□ -1.59
MRE11P49959 CBX1P1-201ENST00000440184 427 ntBASIC5.13□□□□□ -1.59
MRE11P49959 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
MRE11P49959 AC114755.5-201ENST00000447760 831 ntBASIC5.13□□□□□ -1.59
MRE11P49959 RPL39P6-201ENST00000448289 150 ntBASIC5.13□□□□□ -1.59
MRE11P49959 ABCF2P2-201ENST00000450549 296 ntBASIC5.13□□□□□ -1.59
MRE11P49959 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC5.13□□□□□ -1.59
MRE11P49959 ISCUP1-201ENST00000454451 448 ntBASIC5.13□□□□□ -1.59
MRE11P49959 RPL23AP12-201ENST00000467573 473 ntBASIC5.13□□□□□ -1.59
MRE11P49959 RN7SL132P-201ENST00000478131 296 ntBASIC5.13□□□□□ -1.59
MRE11P49959 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC5.13□□□□□ -1.59
MRE11P49959 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC5.13□□□□□ -1.59
MRE11P49959 AC021678.1-201ENST00000505195 936 ntBASIC5.13□□□□□ -1.59
MRE11P49959 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC5.13□□□□□ -1.59
MRE11P49959 NDUFB4P2-201ENST00000509515 391 ntBASIC5.13□□□□□ -1.59
MRE11P49959 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC5.13□□□□□ -1.59
MRE11P49959 AC010342.1-201ENST00000514047 877 ntBASIC5.13□□□□□ -1.59
MRE11P49959 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC5.13□□□□□ -1.59
MRE11P49959 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC5.13□□□□□ -1.59
MRE11P49959 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.13□□□□□ -1.59
MRE11P49959 HNRNPCP4-201ENST00000571636 900 ntBASIC5.13□□□□□ -1.59
MRE11P49959 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC5.13□□□□□ -1.59
MRE11P49959 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC5.13□□□□□ -1.59
MRE11P49959 AC025946.2-201ENST00000603398 234 ntBASIC5.13□□□□□ -1.59
MRE11P49959 PRELID3BP8-201ENST00000604148 295 ntBASIC5.13□□□□□ -1.59
MRE11P49959 AC008945.2-201ENST00000606056 604 ntBASIC5.13□□□□□ -1.59
MRE11P49959 AC103710.1-201ENST00000610003 901 ntBASIC5.13□□□□□ -1.59
MRE11P49959 TUG1_1.1-201ENST00000610654 145 ntBASIC5.13□□□□□ -1.59
MRE11P49959 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC5.13□□□□□ -1.59
MRE11P49959 AP001506.1-201ENST00000615444 211 ntBASIC5.13□□□□□ -1.59
MRE11P49959 uc_338.9-201ENST00000617424 182 ntBASIC5.13□□□□□ -1.59
MRE11P49959 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.13□□□□□ -1.59
MRE11P49959 AC007546.2-201ENST00000623996 360 ntBASIC5.13□□□□□ -1.59
MRE11P49959 OFD1P5Y-201ENST00000447585 2590 ntBASIC5.13□□□□□ -1.59
MRE11P49959 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC5.13□□□□□ -1.59
MRE11P49959 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
MRE11P49959 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC5.13□□□□□ -1.59
MRE11P49959 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
MRE11P49959 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC5.12□□□□□ -1.59
MRE11P49959 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
MRE11P49959 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
MRE11P49959 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MRE11P49959 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
MRE11P49959 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms