Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AP000873.1-201ENST00000463987 400 ntBASIC4.37□□□□□ -1.71
CTCFP49711 AC013828.1-201ENST00000481845 158 ntBASIC4.37□□□□□ -1.71
CTCFP49711 AC017037.1-201ENST00000508460 471 ntBASIC4.37□□□□□ -1.71
CTCFP49711 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.37□□□□□ -1.71
CTCFP49711 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.37□□□□□ -1.71
CTCFP49711 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.37□□□□□ -1.71
CTCFP49711 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.37□□□□□ -1.71
CTCFP49711 AC090502.2-201ENST00000549267 280 ntBASIC4.37□□□□□ -1.71
CTCFP49711 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.37□□□□□ -1.71
CTCFP49711 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC4.37□□□□□ -1.71
CTCFP49711 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC4.37□□□□□ -1.71
CTCFP49711 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.37□□□□□ -1.71
CTCFP49711 AP001521.1-201ENST00000609150 300 ntBASIC4.37□□□□□ -1.71
CTCFP49711 AC131235.4-201ENST00000609288 620 ntBASIC4.37□□□□□ -1.71
CTCFP49711 MIR7851-201ENST00000610611 160 ntBASIC4.37□□□□□ -1.71
CTCFP49711 AC064801.1-201ENST00000612025 407 ntBASIC4.37□□□□□ -1.71
CTCFP49711 AC006065.5-201ENST00000623427 349 ntBASIC4.37□□□□□ -1.71
CTCFP49711 AC120349.2-201ENST00000625002 298 ntBASIC4.37□□□□□ -1.71
CTCFP49711 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC4.37□□□□□ -1.71
CTCFP49711 AP000776.1-201ENST00000530032 1663 ntBASIC4.37□□□□□ -1.71
CTCFP49711 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CTCFP49711 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
CTCFP49711 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.37□□□□□ -1.71
CTCFP49711 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CTCFP49711 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.37□□□□□ -1.71
CTCFP49711 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
CTCFP49711 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CTCFP49711 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CTCFP49711 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CTCFP49711 EXOC5P1-201ENST00000510543 1969 ntBASIC4.36□□□□□ -1.71
CTCFP49711 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.36□□□□□ -1.71
CTCFP49711 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CTCFP49711 Y_RNA.25-201ENST00000362528 102 ntBASIC4.36□□□□□ -1.71
CTCFP49711 RNU6-216P-201ENST00000363282 104 ntBASIC4.36□□□□□ -1.71
CTCFP49711 RNA5SP322-201ENST00000363617 119 ntBASIC4.36□□□□□ -1.71
CTCFP49711 MIR506-201ENST00000384998 124 ntBASIC4.36□□□□□ -1.71
CTCFP49711 RPL7P60-201ENST00000397636 735 ntBASIC4.36□□□□□ -1.71
CTCFP49711 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.36□□□□□ -1.71
CTCFP49711 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.36□□□□□ -1.71
CTCFP49711 AC005005.2-201ENST00000420779 380 ntBASIC4.36□□□□□ -1.71
CTCFP49711 AC093698.1-201ENST00000423843 571 ntBASIC4.36□□□□□ -1.71
CTCFP49711 AC092447.3-201ENST00000426027 686 ntBASIC4.36□□□□□ -1.71
CTCFP49711 USP9YP7-201ENST00000436723 430 ntBASIC4.36□□□□□ -1.71
CTCFP49711 AC025750.2-201ENST00000442609 450 ntBASIC4.36□□□□□ -1.71
CTCFP49711 MTCO1P48-201ENST00000448024 1096 ntBASIC4.36□□□□□ -1.71
CTCFP49711 AC098826.2-201ENST00000452011 651 ntBASIC4.36□□□□□ -1.71
CTCFP49711 USP9YP32-201ENST00000452432 430 ntBASIC4.36□□□□□ -1.71
CTCFP49711 HMGB3P30-201ENST00000457863 606 ntBASIC4.36□□□□□ -1.71
CTCFP49711 AC006517.1-201ENST00000480485 328 ntBASIC4.36□□□□□ -1.71
CTCFP49711 AC025554.1-201ENST00000505641 188 ntBASIC4.36□□□□□ -1.71
CTCFP49711 AC104090.1-201ENST00000506341 1171 ntBASIC4.36□□□□□ -1.71
CTCFP49711 AC087369.1-201ENST00000520775 996 ntBASIC4.36□□□□□ -1.71
CTCFP49711 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.36□□□□□ -1.71
CTCFP49711 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.36□□□□□ -1.71
CTCFP49711 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC4.36□□□□□ -1.71
CTCFP49711 AC125611.1-201ENST00000549563 229 ntBASIC4.36□□□□□ -1.71
CTCFP49711 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC4.36□□□□□ -1.71
CTCFP49711 HIGD1AP17-201ENST00000554576 276 ntBASIC4.36□□□□□ -1.71
CTCFP49711 AC141257.3-201ENST00000572906 215 ntBASIC4.36□□□□□ -1.71
CTCFP49711 OR4K7P-201ENST00000580232 945 ntBASIC4.36□□□□□ -1.71
CTCFP49711 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.36□□□□□ -1.71
CTCFP49711 AC007566.2-201ENST00000603642 413 ntBASIC4.36□□□□□ -1.71
CTCFP49711 AC012603.1-201ENST00000606424 528 ntBASIC4.36□□□□□ -1.71
CTCFP49711 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC4.36□□□□□ -1.71
CTCFP49711 AC009464.1-201ENST00000615731 469 ntBASIC4.36□□□□□ -1.71
CTCFP49711 AP000484.1-201ENST00000620067 1252 ntBASIC4.36□□□□□ -1.71
CTCFP49711 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC4.36□□□□□ -1.71
CTCFP49711 AP005264.7-201ENST00000625003 745 ntBASIC4.36□□□□□ -1.71
CTCFP49711 AC116618.1-201ENST00000634617 774 ntBASIC4.36□□□□□ -1.71
CTCFP49711 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
CTCFP49711 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
CTCFP49711 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
CTCFP49711 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
CTCFP49711 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.36□□□□□ -1.71
CTCFP49711 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CTCFP49711 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
CTCFP49711 PABPC1P7-201ENST00000413177 1513 ntBASIC4.36□□□□□ -1.71
CTCFP49711 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CTCFP49711 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CTCFP49711 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
CTCFP49711 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CTCFP49711 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CTCFP49711 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.35□□□□□ -1.71
CTCFP49711 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.35□□□□□ -1.71
CTCFP49711 OR56A5-201ENST00000340110 738 ntBASIC4.35□□□□□ -1.71
CTCFP49711 RNA5SP167-201ENST00000365461 116 ntBASIC4.35□□□□□ -1.71
CTCFP49711 TAS2R15P-201ENST00000390674 928 ntBASIC4.35□□□□□ -1.71
CTCFP49711 AC119751.3-201ENST00000399720 670 ntBASIC4.35□□□□□ -1.71
CTCFP49711 SSXP10-201ENST00000402595 565 ntBASIC4.35□□□□□ -1.71
CTCFP49711 MIR1250-201ENST00000408098 113 ntBASIC4.35□□□□□ -1.71
CTCFP49711 RNU2-28P-201ENST00000410457 189 ntBASIC4.35□□□□□ -1.71
CTCFP49711 PSMA2P3-201ENST00000429685 675 ntBASIC4.35□□□□□ -1.71
CTCFP49711 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC4.35□□□□□ -1.71
CTCFP49711 MTND1P32-201ENST00000433043 938 ntBASIC4.35□□□□□ -1.71
CTCFP49711 RPL23AP89-201ENST00000439324 255 ntBASIC4.35□□□□□ -1.71
CTCFP49711 RPL23AP16-201ENST00000441715 421 ntBASIC4.35□□□□□ -1.71
CTCFP49711 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC4.35□□□□□ -1.71
CTCFP49711 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC4.35□□□□□ -1.71
CTCFP49711 RPL26P28-201ENST00000451325 435 ntBASIC4.35□□□□□ -1.71
CTCFP49711 AC104073.1-201ENST00000451988 151 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms