Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MRPL49P2-201ENST00000521066 465 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.34□□□□□ -1.87
CDX1P47902 AP000926.4-201ENST00000527351 454 ntBASIC3.34□□□□□ -1.87
CDX1P47902 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.34□□□□□ -1.87
CDX1P47902 OR5AP1P-201ENST00000529730 940 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.34□□□□□ -1.87
CDX1P47902 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.34□□□□□ -1.87
CDX1P47902 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC3.34□□□□□ -1.87
CDX1P47902 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
CDX1P47902 SYF2P1-201ENST00000550658 413 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC3.34□□□□□ -1.87
CDX1P47902 TVP23BP1-201ENST00000557500 617 ntBASIC3.34□□□□□ -1.87
CDX1P47902 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.34□□□□□ -1.87
CDX1P47902 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.34□□□□□ -1.87
CDX1P47902 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.34□□□□□ -1.87
CDX1P47902 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.34□□□□□ -1.87
CDX1P47902 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.34□□□□□ -1.87
CDX1P47902 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.34□□□□□ -1.87
CDX1P47902 AL163642.2-201ENST00000604722 1019 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AL160290.3-201ENST00000604869 165 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AL451086.1-201ENST00000605596 223 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AC092354.2-201ENST00000607786 514 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AC072039.2-201ENST00000608883 439 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AC106028.5-201ENST00000610332 395 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AP002791.1-201ENST00000623291 381 ntBASIC3.34□□□□□ -1.87
CDX1P47902 AC017037.3-201ENST00000625016 472 ntBASIC3.34□□□□□ -1.87
CDX1P47902 OR52H1-202ENST00000641796 1061 ntBASIC3.34□□□□□ -1.87
CDX1P47902 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
CDX1P47902 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CDX1P47902 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.34□□□□□ -1.87
CDX1P47902 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.88
CDX1P47902 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
CDX1P47902 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
CDX1P47902 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
CDX1P47902 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.34□□□□□ -1.88
CDX1P47902 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.34□□□□□ -1.88
CDX1P47902 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
CDX1P47902 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.33□□□□□ -1.88
CDX1P47902 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.33□□□□□ -1.88
CDX1P47902 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.33□□□□□ -1.88
CDX1P47902 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
CDX1P47902 FRG1BP-201ENST00000278882 761 ntBASIC3.33□□□□□ -1.88
CDX1P47902 RNU1-14P-201ENST00000362759 152 ntBASIC3.33□□□□□ -1.88
CDX1P47902 RNU6-744P-201ENST00000365557 107 ntBASIC3.33□□□□□ -1.88
CDX1P47902 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CDX1P47902 RNU6-1316P-201ENST00000384242 108 ntBASIC3.33□□□□□ -1.88
CDX1P47902 RNU6-882P-201ENST00000391025 103 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AL590084.2-201ENST00000401481 382 ntBASIC3.33□□□□□ -1.88
CDX1P47902 MTND4P13-201ENST00000402078 1023 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC3.33□□□□□ -1.88
CDX1P47902 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.33□□□□□ -1.88
CDX1P47902 RPS15AP38-201ENST00000413110 372 ntBASIC3.33□□□□□ -1.88
CDX1P47902 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CDX1P47902 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.33□□□□□ -1.88
CDX1P47902 AC005005.2-201ENST00000420779 380 ntBASIC3.33□□□□□ -1.88
CDX1P47902 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.33□□□□□ -1.88
CDX1P47902 AC004866.2-201ENST00000438285 481 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.33□□□□□ -1.88
CDX1P47902 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.33□□□□□ -1.88
CDX1P47902 OR6K5P-201ENST00000447050 945 ntBASIC3.33□□□□□ -1.88
CDX1P47902 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.33□□□□□ -1.88
CDX1P47902 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.33□□□□□ -1.88
CDX1P47902 AC004801.2-202ENST00000463559 283 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AC103987.1-201ENST00000473394 348 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC3.33□□□□□ -1.88
CDX1P47902 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.33□□□□□ -1.88
CDX1P47902 AC110792.1-201ENST00000491826 472 ntBASIC3.33□□□□□ -1.88
CDX1P47902 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.33□□□□□ -1.88
CDX1P47902 AC093809.1-201ENST00000509155 340 ntBASIC3.33□□□□□ -1.88
CDX1P47902 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.33□□□□□ -1.88
CDX1P47902 HSPE1P23-201ENST00000509838 286 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.33□□□□□ -1.88
CDX1P47902 AC008802.1-201ENST00000519121 791 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.33□□□□□ -1.88
CDX1P47902 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
CDX1P47902 CYCSP29-201ENST00000533731 318 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.33□□□□□ -1.88
CDX1P47902 BNIP3P5-201ENST00000562290 498 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AC009094.1-201ENST00000564443 426 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.33□□□□□ -1.88
CDX1P47902 ISCA1P3-201ENST00000577104 373 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AP001029.3-201ENST00000588063 596 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.33□□□□□ -1.88
CDX1P47902 AC011468.4-201ENST00000603942 409 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AL592436.1-201ENST00000605135 558 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AC024560.3-201ENST00000608482 349 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC3.33□□□□□ -1.88
CDX1P47902 AL592295.2-201ENST00000612578 206 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AC009464.1-201ENST00000615731 469 ntBASIC3.33□□□□□ -1.88
CDX1P47902 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.33□□□□□ -1.88
CDX1P47902 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.33□□□□□ -1.88
CDX1P47902 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.33□□□□□ -1.88
CDX1P47902 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
CDX1P47902 RIOK3P1-201ENST00000418778 1528 ntBASIC3.33□□□□□ -1.88
CDX1P47902 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
CDX1P47902 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.33□□□□□ -1.88
CDX1P47902 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.32□□□□□ -1.88
CDX1P47902 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CDX1P47902 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CDX1P47902 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 147.5 ms