Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC093010.3-201ENST00000570269 15214 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL18A1P39060 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL18A1P39060 RNU6-386P-201ENST00000362650 107 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 MIR3074-201ENST00000384885 81 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 RNU2-2P-201ENST00000410396 191 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 MORF4L1P6-201ENST00000418771 268 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC3.03□□□□□ -1.92
COL18A1P39060 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.03□□□□□ -1.92
COL18A1P39060 C1GALT1P1-201ENST00000548895 1089 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.03□□□□□ -1.92
COL18A1P39060 AC138473.1-201ENST00000605717 526 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 U2.15-201ENST00000611544 191 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 U2.16-201ENST00000613119 191 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 U2.12-201ENST00000613778 191 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 U2.20-201ENST00000613956 192 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 U2.9-201ENST00000615427 191 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 U2.11-201ENST00000616345 191 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 U2.2-201ENST00000616535 191 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 U2.3-201ENST00000617785 191 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 U2.19-201ENST00000618602 191 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 RNU2-1-201ENST00000618664 191 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 AL353997.5-201ENST00000618886 171 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 U2.6-201ENST00000619225 191 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 U2.5-201ENST00000619465 191 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 U2.10-201ENST00000620268 191 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL18A1P39060 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL18A1P39060 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL18A1P39060 AC009487.2-201ENST00000420969 6821 ntBASIC3.03□□□□□ -1.92
COL18A1P39060 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.03□□□□□ -1.92
COL18A1P39060 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL18A1P39060 MTCO3P21-201ENST00000430791 643 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 AL392003.1-201ENST00000434394 243 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC3.02□□□□□ -1.93
COL18A1P39060 RPL36AP33-201ENST00000450395 310 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 MTCO3P11-201ENST00000455103 774 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 AC104629.2-201ENST00000468627 598 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 RN7SL499P-201ENST00000481141 276 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.02□□□□□ -1.93
COL18A1P39060 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC3.02□□□□□ -1.93
COL18A1P39060 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC3.02□□□□□ -1.93
COL18A1P39060 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.02□□□□□ -1.93
COL18A1P39060 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.02□□□□□ -1.93
COL18A1P39060 AP000942.3-201ENST00000603702 160 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL18A1P39060 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL18A1P39060 AC022336.2-201ENST00000568966 2538 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
COL18A1P39060 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
COL18A1P39060 C1DP3-201ENST00000455013 423 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC3.02□□□□□ -1.93
COL18A1P39060 MTCO3P42-201ENST00000509488 518 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 MTCO3P39-201ENST00000514812 518 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 RN7SKP219-201ENST00000516825 296 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
COL18A1P39060 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.02□□□□□ -1.93
COL18A1P39060 AC025281.1-201ENST00000567026 265 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 AP001004.1-201ENST00000582468 324 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.02□□□□□ -1.93
COL18A1P39060 VN1R9P-201ENST00000614184 867 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 AC009318.3-201ENST00000616916 503 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 AC080128.1-201ENST00000474389 1917 ntBASIC3.02□□□□□ -1.93
COL18A1P39060 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
COL18A1P39060 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.01□□□□□ -1.93
COL18A1P39060 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL18A1P39060 RNU6-1159P-201ENST00000362933 107 ntBASIC3.01□□□□□ -1.93
COL18A1P39060 AL139156.1-201ENST00000412785 841 ntBASIC3.01□□□□□ -1.93
COL18A1P39060 HMGB1P11-201ENST00000413899 637 ntBASIC3.01□□□□□ -1.93
COL18A1P39060 PTP4A1P7-201ENST00000423476 514 ntBASIC3.01□□□□□ -1.93
COL18A1P39060 SEC63P1-201ENST00000425785 1258 ntBASIC3.01□□□□□ -1.93
COL18A1P39060 AC092427.1-202ENST00000430569 476 ntBASIC3.01□□□□□ -1.93
COL18A1P39060 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC3.01□□□□□ -1.93
COL18A1P39060 SMARCE1P4-201ENST00000523647 241 ntBASIC3.01□□□□□ -1.93
COL18A1P39060 AC068714.1-201ENST00000559623 800 ntBASIC3.01□□□□□ -1.93
COL18A1P39060 AC084757.1-201ENST00000559987 490 ntBASIC3.01□□□□□ -1.93
COL18A1P39060 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.01□□□□□ -1.93
COL18A1P39060 AC103710.3-201ENST00000608157 948 ntBASIC3.01□□□□□ -1.93
COL18A1P39060 AC104237.2-201ENST00000612456 443 ntBASIC3.01□□□□□ -1.93
COL18A1P39060 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL18A1P39060 RNA5SP88-201ENST00000365560 109 ntBASIC3□□□□□ -1.93
COL18A1P39060 RPL31P45-201ENST00000419532 356 ntBASIC3□□□□□ -1.93
COL18A1P39060 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC3□□□□□ -1.93
COL18A1P39060 AC116337.1-201ENST00000509680 687 ntBASIC3□□□□□ -1.93
COL18A1P39060 SNORD116-26-201ENST00000516006 96 ntBASIC3□□□□□ -1.93
COL18A1P39060 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC3□□□□□ -1.93
COL18A1P39060 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3□□□□□ -1.93
COL18A1P39060 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC3□□□□□ -1.93
COL18A1P39060 AP001521.1-201ENST00000609150 300 ntBASIC3□□□□□ -1.93
COL18A1P39060 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
COL18A1P39060 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL18A1P39060 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL18A1P39060 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3□□□□□ -1.93
COL18A1P39060 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3□□□□□ -1.93
COL18A1P39060 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3□□□□□ -1.93
COL18A1P39060 AL133412.1-201ENST00000380194 2992 ntBASIC3□□□□□ -1.93
COL18A1P39060 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
COL18A1P39060 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
COL18A1P39060 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3□□□□□ -1.93
COL18A1P39060 GABPAP-201ENST00000419271 1356 ntBASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms