Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL8A1P27658 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.29□□□□□ -1.56
COL8A1P27658 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
COL8A1P27658 AC006484.1-201ENST00000435086 1884 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL8A1P27658 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL8A1P27658 AC025470.1-201ENST00000510053 2032 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.28□□□□□ -1.56
COL8A1P27658 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
COL8A1P27658 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC5.28□□□□□ -1.56
COL8A1P27658 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
COL8A1P27658 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL8A1P27658 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL8A1P27658 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.28□□□□□ -1.56
COL8A1P27658 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL8A1P27658 RNA5SP500-201ENST00000364486 119 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 RNU1-46P-201ENST00000384425 164 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 RPS29P13-201ENST00000402041 169 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 RPL35AP3-201ENST00000414680 288 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 BMS1P17-202ENST00000416720 316 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.28□□□□□ -1.56
COL8A1P27658 AL354766.1-201ENST00000423396 542 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.28□□□□□ -1.56
COL8A1P27658 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.28□□□□□ -1.56
COL8A1P27658 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.28□□□□□ -1.56
COL8A1P27658 RPL23AP60-201ENST00000450011 454 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 AC009220.1-201ENST00000451614 275 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 GEMIN2P1-201ENST00000454246 752 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 TRBV26-201ENST00000456572 344 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.28□□□□□ -1.56
COL8A1P27658 RPL23AP55-201ENST00000498163 452 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.28□□□□□ -1.56
COL8A1P27658 YWHAEP4-201ENST00000505390 198 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 RBBP4P6-201ENST00000508098 202 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5.28□□□□□ -1.56
COL8A1P27658 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC5.28□□□□□ -1.56
COL8A1P27658 CASP1-212ENST00000531166 300 ntTSL 5 BASIC5.28□□□□□ -1.56
COL8A1P27658 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC5.28□□□□□ -1.56
COL8A1P27658 AC009643.1-201ENST00000532030 391 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.28□□□□□ -1.56
COL8A1P27658 MRPS18CP4-201ENST00000535821 231 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC5.28□□□□□ -1.56
COL8A1P27658 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.28□□□□□ -1.56
COL8A1P27658 AC023813.4-201ENST00000607580 580 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 MIR376A1-201ENST00000616574 68 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 CYP3A51P-201ENST00000633513 256 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.28□□□□□ -1.56
COL8A1P27658 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
COL8A1P27658 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
COL8A1P27658 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL8A1P27658 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL8A1P27658 AC005618.1-201ENST00000606901 3148 ntBASIC5.28□□□□□ -1.56
COL8A1P27658 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL8A1P27658 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL8A1P27658 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL8A1P27658 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL8A1P27658 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL8A1P27658 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.27□□□□□ -1.57
COL8A1P27658 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.27□□□□□ -1.57
COL8A1P27658 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
COL8A1P27658 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL8A1P27658 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.27□□□□□ -1.57
COL8A1P27658 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL8A1P27658 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL8A1P27658 AC023421.1-201ENST00000590535 1785 ntBASIC5.27□□□□□ -1.57
COL8A1P27658 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
COL8A1P27658 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
COL8A1P27658 BX322639.1-202ENST00000423987 2213 ntBASIC5.27□□□□□ -1.57
COL8A1P27658 TNPO1P2-201ENST00000426249 2665 ntBASIC5.27□□□□□ -1.57
COL8A1P27658 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC5.27□□□□□ -1.57
COL8A1P27658 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL8A1P27658 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL8A1P27658 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL8A1P27658 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL8A1P27658 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL8A1P27658 Y_RNA.497-201ENST00000384447 98 ntBASIC5.27□□□□□ -1.57
COL8A1P27658 MIR223-201ENST00000385204 110 ntBASIC5.27□□□□□ -1.57
COL8A1P27658 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
COL8A1P27658 DBIP1-201ENST00000401435 260 ntBASIC5.27□□□□□ -1.57
COL8A1P27658 AL024474.1-201ENST00000404655 591 ntBASIC5.27□□□□□ -1.57
COL8A1P27658 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.27□□□□□ -1.57
COL8A1P27658 AL713922.1-201ENST00000416477 747 ntBASIC5.27□□□□□ -1.57
COL8A1P27658 AL034379.1-201ENST00000423216 253 ntBASIC5.27□□□□□ -1.57
COL8A1P27658 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC5.27□□□□□ -1.57
COL8A1P27658 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC5.27□□□□□ -1.57
COL8A1P27658 HMGB3P24-201ENST00000433260 622 ntBASIC5.27□□□□□ -1.57
COL8A1P27658 AC073410.1-201ENST00000435125 589 ntBASIC5.27□□□□□ -1.57
COL8A1P27658 RPS12P17-201ENST00000438591 377 ntBASIC5.27□□□□□ -1.57
COL8A1P27658 PRDX3P3-201ENST00000447765 522 ntBASIC5.27□□□□□ -1.57
COL8A1P27658 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC5.27□□□□□ -1.57
COL8A1P27658 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC5.27□□□□□ -1.57
COL8A1P27658 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC5.27□□□□□ -1.57
COL8A1P27658 SNORD97-201ENST00000459187 142 ntBASIC5.27□□□□□ -1.57
COL8A1P27658 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.27□□□□□ -1.57
COL8A1P27658 AC010343.2-201ENST00000510162 224 ntBASIC5.27□□□□□ -1.57
COL8A1P27658 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC5.27□□□□□ -1.57
COL8A1P27658 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC5.27□□□□□ -1.57
COL8A1P27658 AC093853.1-201ENST00000515689 483 ntBASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms