Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC119751.4-201ENST00000507498 357 ntBASIC4.11□□□□□ -1.75
BDNFP23560 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC4.11□□□□□ -1.75
BDNFP23560 AC079395.1-201ENST00000510981 262 ntBASIC4.11□□□□□ -1.75
BDNFP23560 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.11□□□□□ -1.75
BDNFP23560 SNORA70.16-201ENST00000516390 95 ntBASIC4.11□□□□□ -1.75
BDNFP23560 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
BDNFP23560 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC4.11□□□□□ -1.75
BDNFP23560 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC4.11□□□□□ -1.75
BDNFP23560 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.11□□□□□ -1.75
BDNFP23560 AC092354.2-201ENST00000607786 514 ntBASIC4.11□□□□□ -1.75
BDNFP23560 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.11□□□□□ -1.75
BDNFP23560 AL391834.2-201ENST00000609982 546 ntBASIC4.11□□□□□ -1.75
BDNFP23560 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
BDNFP23560 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
BDNFP23560 MIR4727-201ENST00000622232 55 ntBASIC4.11□□□□□ -1.75
BDNFP23560 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
BDNFP23560 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
BDNFP23560 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
BDNFP23560 FAM35BP-202ENST00000497389 3337 ntBASIC4.11□□□□□ -1.75
BDNFP23560 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
BDNFP23560 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
BDNFP23560 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
BDNFP23560 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
BDNFP23560 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
BDNFP23560 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
BDNFP23560 AC010733.2-201ENST00000589496 5702 ntBASIC4.1□□□□□ -1.75
BDNFP23560 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
BDNFP23560 RNU4-68P-201ENST00000364314 141 ntBASIC4.1□□□□□ -1.75
BDNFP23560 RNU6-621P-201ENST00000364752 109 ntBASIC4.1□□□□□ -1.75
BDNFP23560 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
BDNFP23560 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC4.1□□□□□ -1.75
BDNFP23560 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
BDNFP23560 ERHP2-201ENST00000402323 299 ntBASIC4.1□□□□□ -1.75
BDNFP23560 RN7SKP156-201ENST00000410308 342 ntBASIC4.1□□□□□ -1.75
BDNFP23560 RNA5SP306-201ENST00000411087 107 ntBASIC4.1□□□□□ -1.75
BDNFP23560 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC4.1□□□□□ -1.75
BDNFP23560 RPL21P40-201ENST00000428586 483 ntBASIC4.1□□□□□ -1.75
BDNFP23560 SNRPEP7-201ENST00000438350 220 ntBASIC4.1□□□□□ -1.75
BDNFP23560 THAP5P1-201ENST00000439089 262 ntBASIC4.1□□□□□ -1.75
BDNFP23560 ELOCP8-201ENST00000439309 332 ntBASIC4.1□□□□□ -1.75
BDNFP23560 ELOCP15-201ENST00000442090 332 ntBASIC4.1□□□□□ -1.75
BDNFP23560 ZNF886P-201ENST00000450781 723 ntBASIC4.1□□□□□ -1.75
BDNFP23560 HMGB3P22-202ENST00000451823 572 ntBASIC4.1□□□□□ -1.75
BDNFP23560 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC4.1□□□□□ -1.75
BDNFP23560 AC026801.2-201ENST00000515352 425 ntBASIC4.1□□□□□ -1.75
BDNFP23560 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.1□□□□□ -1.75
BDNFP23560 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.1□□□□□ -1.75
BDNFP23560 AP001269.3-201ENST00000588718 329 ntBASIC4.1□□□□□ -1.75
BDNFP23560 AC034229.5-201ENST00000624258 185 ntBASIC4.1□□□□□ -1.75
BDNFP23560 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.1□□□□□ -1.75
BDNFP23560 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.1□□□□□ -1.75
BDNFP23560 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
BDNFP23560 TNPO1P3-201ENST00000436471 2662 ntBASIC4.09□□□□□ -1.75
BDNFP23560 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
BDNFP23560 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
BDNFP23560 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
BDNFP23560 Z98941.1-201ENST00000407764 100 ntBASIC4.09□□□□□ -1.75
BDNFP23560 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.09□□□□□ -1.75
BDNFP23560 SSXP9-201ENST00000417503 292 ntBASIC4.09□□□□□ -1.75
BDNFP23560 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC4.09□□□□□ -1.75
BDNFP23560 USP9YP24-201ENST00000434374 697 ntBASIC4.09□□□□□ -1.75
BDNFP23560 AC007389.2-201ENST00000434630 306 ntBASIC4.09□□□□□ -1.75
BDNFP23560 Z74696.2-201ENST00000436514 498 ntBASIC4.09□□□□□ -1.75
BDNFP23560 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.09□□□□□ -1.75
BDNFP23560 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC4.09□□□□□ -1.75
BDNFP23560 USP9YP17-201ENST00000444617 696 ntBASIC4.09□□□□□ -1.75
BDNFP23560 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.09□□□□□ -1.75
BDNFP23560 MTND1P9-201ENST00000453775 944 ntBASIC4.09□□□□□ -1.75
BDNFP23560 RNU7-136P-201ENST00000458819 69 ntBASIC4.09□□□□□ -1.75
BDNFP23560 AL049714.1-201ENST00000466686 347 ntBASIC4.09□□□□□ -1.75
BDNFP23560 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.09□□□□□ -1.75
BDNFP23560 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC4.09□□□□□ -1.75
BDNFP23560 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC4.09□□□□□ -1.75
BDNFP23560 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC4.09□□□□□ -1.75
BDNFP23560 AC139783.2-201ENST00000504847 1145 ntBASIC4.09□□□□□ -1.75
BDNFP23560 AC111000.2-201ENST00000507775 550 ntBASIC4.09□□□□□ -1.75
BDNFP23560 HNRNPKP5-201ENST00000515300 253 ntBASIC4.09□□□□□ -1.75
BDNFP23560 SCARNA14-201ENST00000516903 136 ntBASIC4.09□□□□□ -1.75
BDNFP23560 AC022695.1-201ENST00000522089 237 ntBASIC4.09□□□□□ -1.75
BDNFP23560 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
BDNFP23560 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.09□□□□□ -1.75
BDNFP23560 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.09□□□□□ -1.75
BDNFP23560 AC087499.8-201ENST00000578406 226 ntBASIC4.09□□□□□ -1.75
BDNFP23560 OR4K8P-201ENST00000578842 1048 ntBASIC4.09□□□□□ -1.75
BDNFP23560 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.09□□□□□ -1.75
BDNFP23560 AC106791.2-201ENST00000604680 391 ntBASIC4.09□□□□□ -1.75
BDNFP23560 AL590099.1-201ENST00000615276 138 ntBASIC4.09□□□□□ -1.75
BDNFP23560 AL445264.1-201ENST00000621719 171 ntBASIC4.09□□□□□ -1.75
BDNFP23560 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC4.09□□□□□ -1.75
BDNFP23560 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.09□□□□□ -1.75
BDNFP23560 AP003122.6-201ENST00000623831 495 ntBASIC4.09□□□□□ -1.75
BDNFP23560 AL159972.1-201ENST00000625150 448 ntBASIC4.09□□□□□ -1.75
BDNFP23560 AC090897.3-201ENST00000636973 1157 ntBASIC4.09□□□□□ -1.75
BDNFP23560 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
BDNFP23560 TPTE2P4-201ENST00000258589 1605 ntBASIC4.09□□□□□ -1.76
BDNFP23560 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.09□□□□□ -1.76
BDNFP23560 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.76
BDNFP23560 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
BDNFP23560 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
BDNFP23560 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms