Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.13□□□□□ -1.91
CLDN9O95484 AC073657.2-201ENST00000605661 303 ntBASIC3.13□□□□□ -1.91
CLDN9O95484 AC011816.2-201ENST00000607089 556 ntBASIC3.13□□□□□ -1.91
CLDN9O95484 U1.23-201ENST00000610293 146 ntBASIC3.13□□□□□ -1.91
CLDN9O95484 RNU1-68P-201ENST00000615382 146 ntBASIC3.13□□□□□ -1.91
CLDN9O95484 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
CLDN9O95484 U1.39-201ENST00000621562 146 ntBASIC3.13□□□□□ -1.91
CLDN9O95484 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
CLDN9O95484 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.13□□□□□ -1.91
CLDN9O95484 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.13□□□□□ -1.91
CLDN9O95484 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CLDN9O95484 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.13□□□□□ -1.91
CLDN9O95484 AL049781.1-201ENST00000623195 3585 ntBASIC3.13□□□□□ -1.91
CLDN9O95484 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CLDN9O95484 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.13□□□□□ -1.91
CLDN9O95484 SRP72P2-201ENST00000344851 1979 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CLDN9O95484 AC021755.1-201ENST00000559747 1447 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 AC244517.1-201ENST00000606030 2086 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 AC116096.1-201ENST00000566804 2314 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
CLDN9O95484 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CLDN9O95484 RNU6-251P-201ENST00000363235 104 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 AL024474.1-201ENST00000404655 591 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 RNA5SP293-201ENST00000410527 113 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.12□□□□□ -1.91
CLDN9O95484 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.12□□□□□ -1.91
CLDN9O95484 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.12□□□□□ -1.91
CLDN9O95484 AC005019.1-201ENST00000436455 431 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CLDN9O95484 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.12□□□□□ -1.91
CLDN9O95484 SLC31A1P1-201ENST00000451221 567 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 AP002884.2-201ENST00000471647 395 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 ST13P14-201ENST00000474095 734 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 RPS27AP1-201ENST00000475545 471 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.12□□□□□ -1.91
CLDN9O95484 RNA5SP468-201ENST00000516782 93 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 AC023632.1-201ENST00000518463 375 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 AP001317.1-201ENST00000531194 960 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 AC011611.1-201ENST00000552179 197 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 AC044913.1-201ENST00000557200 430 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.12□□□□□ -1.91
CLDN9O95484 SULT1C2P1-202ENST00000562418 459 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 ZNF415P1-201ENST00000582279 1166 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.12□□□□□ -1.91
CLDN9O95484 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CLDN9O95484 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.12□□□□□ -1.91
CLDN9O95484 AP003973.1-201ENST00000604639 691 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 AC092650.2-201ENST00000619984 902 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 AC010733.2-201ENST00000589496 5702 ntBASIC3.12□□□□□ -1.91
CLDN9O95484 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
CLDN9O95484 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CLDN9O95484 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.12□□□□□ -1.91
CLDN9O95484 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
CLDN9O95484 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.12□□□□□ -1.91
CLDN9O95484 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CLDN9O95484 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CLDN9O95484 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
CLDN9O95484 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
CLDN9O95484 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.11□□□□□ -1.91
CLDN9O95484 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.11□□□□□ -1.91
CLDN9O95484 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
CLDN9O95484 HMGB3P23-201ENST00000414981 585 ntBASIC3.11□□□□□ -1.91
CLDN9O95484 AC027644.1-201ENST00000419595 298 ntBASIC3.11□□□□□ -1.91
CLDN9O95484 SSXP4-201ENST00000451349 245 ntBASIC3.11□□□□□ -1.91
CLDN9O95484 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.11□□□□□ -1.91
CLDN9O95484 RPL21P10-201ENST00000463521 490 ntBASIC3.11□□□□□ -1.91
CLDN9O95484 RN7SL293P-201ENST00000481765 281 ntBASIC3.11□□□□□ -1.91
CLDN9O95484 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.11□□□□□ -1.91
CLDN9O95484 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CLDN9O95484 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.11□□□□□ -1.91
CLDN9O95484 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.11□□□□□ -1.91
CLDN9O95484 snoZ278.1-201ENST00000517059 112 ntBASIC3.11□□□□□ -1.91
CLDN9O95484 OR4P1P-201ENST00000530808 1136 ntBASIC3.11□□□□□ -1.91
CLDN9O95484 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.11□□□□□ -1.91
CLDN9O95484 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.11□□□□□ -1.91
CLDN9O95484 MTND4LP25-201ENST00000570218 163 ntBASIC3.11□□□□□ -1.91
CLDN9O95484 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.11□□□□□ -1.91
CLDN9O95484 MIR4666A-201ENST00000580160 79 ntBASIC3.11□□□□□ -1.91
CLDN9O95484 RN7SL339P-201ENST00000580597 296 ntBASIC3.11□□□□□ -1.91
CLDN9O95484 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.11□□□□□ -1.91
CLDN9O95484 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.11□□□□□ -1.91
CLDN9O95484 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC3.11□□□□□ -1.91
CLDN9O95484 AC008759.3-201ENST00000613300 508 ntBASIC3.11□□□□□ -1.91
CLDN9O95484 AL590240.3-201ENST00000621416 943 ntBASIC3.11□□□□□ -1.91
CLDN9O95484 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC3.11□□□□□ -1.91
CLDN9O95484 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
CLDN9O95484 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.11□□□□□ -1.91
CLDN9O95484 DBF4P1-201ENST00000412976 1892 ntBASIC3.11□□□□□ -1.91
CLDN9O95484 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CLDN9O95484 NUP58P1-201ENST00000502546 1738 ntBASIC3.1□□□□□ -1.91
CLDN9O95484 AC093908.1-201ENST00000623125 8092 ntBASIC3.1□□□□□ -1.91
CLDN9O95484 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CLDN9O95484 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
CLDN9O95484 RNU1-33P-201ENST00000364249 162 ntBASIC3.1□□□□□ -1.91
CLDN9O95484 OR6K3-202ENST00000368146 996 ntBASIC3.1□□□□□ -1.91
CLDN9O95484 MIR591-201ENST00000385290 95 ntBASIC3.1□□□□□ -1.91
CLDN9O95484 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
CLDN9O95484 AL603865.2-201ENST00000401679 213 ntBASIC3.1□□□□□ -1.91
CLDN9O95484 NDUFB4P4-201ENST00000404822 243 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms