Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 SNORA62.3-201ENST00000365110 153 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 RNU6-1215P-201ENST00000384441 102 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 SNORD115.1-201ENST00000391109 76 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AL031679.1-201ENST00000400616 525 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 RN7SKP33-201ENST00000410942 340 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 UBE2V1P10-201ENST00000414685 269 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 MTCO2P5-201ENST00000422621 426 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 NPM1P34-201ENST00000428821 893 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 EZH2P1-201ENST00000431167 291 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AL022238.1-201ENST00000442557 355 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AC002381.1-201ENST00000447049 280 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AL451050.1-201ENST00000450126 415 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AC012671.1-201ENST00000451912 203 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 NDUFAF4P4-201ENST00000454883 502 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 RPL7P19-201ENST00000469948 618 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AC017015.1-201ENST00000477387 286 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AP002812.1-201ENST00000495378 474 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AC093677.1-201ENST00000514414 678 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 RNU6-1003P-201ENST00000517099 105 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 DEFB109D-201ENST00000529497 240 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AC022878.1-201ENST00000530684 149 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AC068831.4-201ENST00000556118 109 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AL121834.1-201ENST00000572284 509 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 CPHL1P-201ENST00000461341 3407 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 RNA5SP52-201ENST00000362448 134 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 RNA5SP307-201ENST00000362863 116 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 RNU5F-7P-201ENST00000363696 115 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 RHOT1P2-201ENST00000366423 333 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 RNU6-1279P-201ENST00000383917 103 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 RNU6-517P-201ENST00000384362 110 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 Y_RNA.598-201ENST00000410480 95 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 RPS15AP40-201ENST00000419621 391 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 RPL7AP25-201ENST00000423357 805 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 RWDD4P2-201ENST00000426392 563 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 BX890604.2-201ENST00000427883 474 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 RPS3AP54-201ENST00000435535 734 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AP000542.1-201ENST00000448473 371 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 PAXBP1P1-201ENST00000449315 447 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 BTF3P5-201ENST00000457252 467 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 SRRM1P2-201ENST00000464531 1192 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 RPL21P126-201ENST00000470049 478 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 RN7SL810P-201ENST00000493031 276 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC093767.1-201ENST00000504523 156 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC010460.1-201ENST00000507087 466 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC108064.1-201ENST00000513791 460 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC034159.1-201ENST00000513885 583 ntBASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.24□□□□□ -1.73
VPS4AQ9UN37 AC069240.1-201ENST00000548774 375 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms