Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 TNPO1P3-201ENST00000436471 2662 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 RNU6-216P-201ENST00000363282 104 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 Y_RNA.465-201ENST00000384293 102 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 MIR23B-201ENST00000384832 97 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 CRYBB2P1-203ENST00000415709 538 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 AC017079.2-201ENST00000416102 485 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 AL159169.1-201ENST00000421119 127 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 AC006989.1-201ENST00000427212 131 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 AC006548.1-201ENST00000427470 102 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 ATP5JP1-201ENST00000431631 322 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 COX7BP2-201ENST00000437976 242 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 HMGB1P12-201ENST00000438594 598 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 AC092641.1-201ENST00000440229 772 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 FGF7P5-201ENST00000441829 291 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 MTCO2P25-201ENST00000447065 681 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 U3.44-201ENST00000458938 192 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 RPL21P104-201ENST00000464143 478 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 ACTG1P13-201ENST00000486987 1043 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 AC110768.1-201ENST00000509222 400 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 HIGD1AP17-201ENST00000554576 276 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 AC022662.1-201ENST00000580252 331 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 AL034351.1-201ENST00000605288 668 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 AC007349.4-201ENST00000608114 532 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 AC090116.1-201ENST00000615679 446 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 U4.6-201ENST00000621618 127 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 AC092184.1-201ENST00000625042 715 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 CR381572.1-201ENST00000625098 102 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 AL392088.2-201ENST00000637607 285 ntBASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CPSF3Q9UKF6 CR381670.1-201ENST00000624291 1693 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AC073073.2-201ENST00000609827 2578 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 RNU6-600P-201ENST00000362524 99 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 RNU6-730P-201ENST00000383954 104 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 MIR218-2-201ENST00000385006 110 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AC016769.3-201ENST00000396562 315 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 ARF4P3-201ENST00000397387 509 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AL391417.1-201ENST00000404100 426 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AL050321.1-201ENST00000432363 400 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 VDAC1P3-201ENST00000434069 851 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AC073063.1-201ENST00000434352 607 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 MTCO2P20-201ENST00000437339 673 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 Z73417.1-201ENST00000447373 778 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 SLC31A1P1-201ENST00000451221 567 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 RPL21P134-201ENST00000453468 483 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AC092757.1-201ENST00000467293 467 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 HMGB1P22-201ENST00000505315 124 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 RN7SKP244-201ENST00000516513 307 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 NARSP2-201ENST00000518524 679 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AP006245.1-201ENST00000522549 120 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AP000926.4-201ENST00000527351 454 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AP000619.3-201ENST00000535634 1127 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AC008127.2-201ENST00000549925 1075 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AC103881.1-201ENST00000603476 538 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 DUXAP3-201ENST00000603616 594 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AC107952.2-201ENST00000606048 486 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AC080013.3-201ENST00000606839 578 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 U3.45-201ENST00000607547 219 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 U7.8-201ENST00000619968 63 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AC009318.4-201ENST00000620496 486 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 AP001148.1-201ENST00000624124 2359 ntBASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CPSF3Q9UKF6 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CPSF3Q9UKF6 CDR1-202ENST00000625883 1485 ntBASIC3.84□□□□□ -1.8
CPSF3Q9UKF6 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CPSF3Q9UKF6 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CPSF3Q9UKF6 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.8
CPSF3Q9UKF6 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
CPSF3Q9UKF6 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AL049781.1-201ENST00000623195 3585 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 180.6 ms