Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RPS15AP6-201ENST00000420703 385 ntBASIC3.75□□□□□ -1.81
USP28Q96RU2 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.75□□□□□ -1.81
USP28Q96RU2 RPF2P1-201ENST00000424137 906 ntBASIC3.75□□□□□ -1.81
USP28Q96RU2 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.75□□□□□ -1.81
USP28Q96RU2 AC091286.1-201ENST00000431233 461 ntBASIC3.75□□□□□ -1.81
USP28Q96RU2 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC3.75□□□□□ -1.81
USP28Q96RU2 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC3.75□□□□□ -1.81
USP28Q96RU2 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.75□□□□□ -1.81
USP28Q96RU2 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.75□□□□□ -1.81
USP28Q96RU2 AC122718.1-201ENST00000439448 744 ntBASIC3.75□□□□□ -1.81
USP28Q96RU2 MTATP6P26-201ENST00000445926 662 ntBASIC3.75□□□□□ -1.81
USP28Q96RU2 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.75□□□□□ -1.81
USP28Q96RU2 MTCYBP11-201ENST00000447254 1109 ntBASIC3.75□□□□□ -1.81
USP28Q96RU2 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.75□□□□□ -1.81
USP28Q96RU2 AC115115.1-201ENST00000449927 248 ntBASIC3.75□□□□□ -1.81
USP28Q96RU2 RPL7P38-201ENST00000488396 739 ntBASIC3.75□□□□□ -1.81
USP28Q96RU2 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.75□□□□□ -1.81
USP28Q96RU2 AC113347.3-201ENST00000509113 148 ntBASIC3.75□□□□□ -1.81
USP28Q96RU2 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.75□□□□□ -1.81
USP28Q96RU2 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC3.75□□□□□ -1.81
USP28Q96RU2 RN7SKP289-201ENST00000517244 295 ntBASIC3.75□□□□□ -1.81
USP28Q96RU2 PAICSP4-201ENST00000517543 1253 ntBASIC3.75□□□□□ -1.81
USP28Q96RU2 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC3.75□□□□□ -1.81
USP28Q96RU2 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.75□□□□□ -1.81
USP28Q96RU2 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.75□□□□□ -1.81
USP28Q96RU2 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.75□□□□□ -1.81
USP28Q96RU2 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.75□□□□□ -1.81
USP28Q96RU2 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.75□□□□□ -1.81
USP28Q96RU2 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.75□□□□□ -1.81
USP28Q96RU2 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.75□□□□□ -1.81
USP28Q96RU2 MIR4666A-201ENST00000580160 79 ntBASIC3.75□□□□□ -1.81
USP28Q96RU2 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.75□□□□□ -1.81
USP28Q96RU2 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.75□□□□□ -1.81
USP28Q96RU2 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.75□□□□□ -1.81
USP28Q96RU2 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.75□□□□□ -1.81
USP28Q96RU2 AC087821.2-201ENST00000637086 450 ntBASIC3.75□□□□□ -1.81
USP28Q96RU2 U6.98-201ENST00000637157 84 ntBASIC3.75□□□□□ -1.81
USP28Q96RU2 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
USP28Q96RU2 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
USP28Q96RU2 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
USP28Q96RU2 ELL2P4-201ENST00000446870 1376 ntBASIC3.75□□□□□ -1.81
USP28Q96RU2 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
USP28Q96RU2 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.74□□□□□ -1.81
USP28Q96RU2 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.74□□□□□ -1.81
USP28Q96RU2 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
USP28Q96RU2 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
USP28Q96RU2 NACA3P-201ENST00000359690 648 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 RNU6-1214P-201ENST00000363650 109 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 SNORA7.2-201ENST00000364446 145 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 RNU6-805P-201ENST00000365643 106 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
USP28Q96RU2 RNU6-413P-201ENST00000384115 107 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 MIR490-201ENST00000384865 128 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 MIR218-2-201ENST00000385006 110 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 BTBD10P2-201ENST00000404779 676 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 AL445189.1-201ENST00000405722 338 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 RNA5SP44-201ENST00000410446 133 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC3.74□□□□□ -1.81
USP28Q96RU2 HMGB1P49-201ENST00000418882 569 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 BX842559.1-201ENST00000419615 532 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 PAICSP7-201ENST00000419829 962 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.74□□□□□ -1.81
USP28Q96RU2 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.74□□□□□ -1.81
USP28Q96RU2 RPL23AP76-201ENST00000441860 458 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 AC004865.1-201ENST00000442276 1003 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 Z99127.3-201ENST00000448158 395 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 AC125238.1-201ENST00000448842 249 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 AC004263.1-201ENST00000479327 332 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.74□□□□□ -1.81
USP28Q96RU2 AC021678.1-201ENST00000505195 936 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 AC109471.1-201ENST00000511631 612 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.74□□□□□ -1.81
USP28Q96RU2 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
USP28Q96RU2 IGKV2D-19-201ENST00000523346 262 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.74□□□□□ -1.81
USP28Q96RU2 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.74□□□□□ -1.81
USP28Q96RU2 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.74□□□□□ -1.81
USP28Q96RU2 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC3.74□□□□□ -1.81
USP28Q96RU2 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
USP28Q96RU2 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.74□□□□□ -1.81
USP28Q96RU2 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.74□□□□□ -1.81
USP28Q96RU2 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.74□□□□□ -1.81
USP28Q96RU2 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.74□□□□□ -1.81
USP28Q96RU2 HMGN2P28-201ENST00000606102 262 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.74□□□□□ -1.81
USP28Q96RU2 AC105227.2-201ENST00000615075 605 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 AC109454.4-201ENST00000623411 649 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
USP28Q96RU2 MIR7153-201ENST00000637758 57 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
USP28Q96RU2 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.74□□□□□ -1.81
USP28Q96RU2 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.74□□□□□ -1.81
USP28Q96RU2 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
USP28Q96RU2 AC025263.3-201ENST00000622965 1396 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
USP28Q96RU2 AP001148.1-201ENST00000624124 2359 ntBASIC3.74□□□□□ -1.81
USP28Q96RU2 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.74□□□□□ -1.81
USP28Q96RU2 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.73□□□□□ -1.81
USP28Q96RU2 AC046144.1-201ENST00000478559 1853 ntBASIC3.73□□□□□ -1.81
USP28Q96RU2 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms