Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 HMGB1P25-201ENST00000468402 607 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 KLRA1P-201ENST00000503499 986 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AP003066.2-201ENST00000529375 555 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AC010198.2-201ENST00000550612 259 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AC008507.2-201ENST00000588402 1176 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AC012669.1-201ENST00000603209 283 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AL355810.1-201ENST00000614629 552 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 AC091925.2-201ENST00000625059 256 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 MTCO1P23-201ENST00000415223 1526 ntBASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
HDDC3Q8N4P3 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 SNORA48.5-201ENST00000391143 135 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 TAF9BP1-201ENST00000396646 746 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AL122016.1-201ENST00000403365 367 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 RNU2-15P-201ENST00000410692 191 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 RHEBP3-201ENST00000411920 351 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AC109780.2-201ENST00000413467 845 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 SGO1P2-201ENST00000429458 1589 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AL365396.1-201ENST00000430854 671 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 HMGN1P5-201ENST00000448591 263 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 RPL26P28-201ENST00000451325 435 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 RBMY2UP-201ENST00000453474 324 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AC026412.2-201ENST00000512270 1075 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AC027309.2-201ENST00000520566 192 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 MTCO3P15-201ENST00000526563 574 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AC018630.1-201ENST00000541376 925 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 MIR5047-201ENST00000579212 100 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AC126365.2-201ENST00000580630 379 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AC002546.1-201ENST00000588041 2504 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AL035411.2-201ENST00000604022 421 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AL445435.1-201ENST00000604232 665 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AC006249.1-201ENST00000621223 471 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AP003355.3-201ENST00000623465 114 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AP003476.1-201ENST00000623984 516 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 AC007656.2-201ENST00000624902 4547 ntBASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HDDC3Q8N4P3 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 AC021755.1-201ENST00000559747 1447 ntBASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 RNU4-35P-201ENST00000362588 141 ntBASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 CYCSP45-201ENST00000402289 315 ntBASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 AL512649.1-201ENST00000428997 581 ntBASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 MTCO1P3-201ENST00000429327 192 ntBASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 AC236972.1-201ENST00000433225 199 ntBASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 RPL17P49-201ENST00000443728 411 ntBASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 MTCO3P20-201ENST00000454926 688 ntBASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 AC008155.2-201ENST00000464337 397 ntBASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 AC092757.1-201ENST00000467293 467 ntBASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 AC010625.1-201ENST00000511296 403 ntBASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.56□□□□□ -1.84
HDDC3Q8N4P3 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms