Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RN7SKP177-201ENST00000410567 355 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SF3A1Q15459 EI24P1-201ENST00000416584 867 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 ELOCP4-201ENST00000420090 333 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 AC007283.2-201ENST00000424739 197 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 RPS3AP44-201ENST00000425466 790 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 AC079780.1-201ENST00000428259 207 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 AC068287.1-201ENST00000430283 295 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.41□□□□□ -1.54
SF3A1Q15459 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.41□□□□□ -1.54
SF3A1Q15459 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC5.41□□□□□ -1.54
SF3A1Q15459 MTND1P1-201ENST00000445453 368 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC5.41□□□□□ -1.54
SF3A1Q15459 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC5.41□□□□□ -1.54
SF3A1Q15459 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC5.41□□□□□ -1.54
SF3A1Q15459 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.41□□□□□ -1.54
SF3A1Q15459 AC135721.1-201ENST00000497954 479 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 RNU1-6P-201ENST00000516290 144 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC5.41□□□□□ -1.54
SF3A1Q15459 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SF3A1Q15459 DEFB108A-201ENST00000530110 222 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC5.41□□□□□ -1.54
SF3A1Q15459 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC5.41□□□□□ -1.54
SF3A1Q15459 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC5.41□□□□□ -1.54
SF3A1Q15459 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC5.41□□□□□ -1.54
SF3A1Q15459 AL133153.1-201ENST00000557756 303 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 AC010928.3-201ENST00000587712 541 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC5.41□□□□□ -1.54
SF3A1Q15459 VN1R79P-201ENST00000593540 513 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 MIR6820-201ENST00000611508 62 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 AC245517.5-201ENST00000611529 162 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SF3A1Q15459 AC100827.5-201ENST00000615883 426 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 AC095031.1-201ENST00000623685 672 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SF3A1Q15459 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.41□□□□□ -1.54
SF3A1Q15459 MAPK10-263ENST00000641052 4307 ntBASIC5.41□□□□□ -1.54
SF3A1Q15459 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SF3A1Q15459 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SF3A1Q15459 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC5.4□□□□□ -1.54
SF3A1Q15459 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SF3A1Q15459 OSBPL9P4-201ENST00000371707 1800 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 RPS3AP24-201ENST00000407896 734 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 RNU4-65P-201ENST00000410473 140 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC5.4□□□□□ -1.54
SF3A1Q15459 PSMD10P3-201ENST00000437000 448 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.4□□□□□ -1.54
SF3A1Q15459 AC006466.1-201ENST00000438721 289 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC5.4□□□□□ -1.54
SF3A1Q15459 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SF3A1Q15459 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC5.4□□□□□ -1.54
SF3A1Q15459 FABP3P2-201ENST00000453169 399 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 MTND1P12-201ENST00000455231 147 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC5.4□□□□□ -1.54
SF3A1Q15459 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC5.4□□□□□ -1.54
SF3A1Q15459 AC012158.1-204ENST00000483430 465 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC5.4□□□□□ -1.54
SF3A1Q15459 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
SF3A1Q15459 MLLT10P2-201ENST00000506434 249 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SF3A1Q15459 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC5.4□□□□□ -1.54
SF3A1Q15459 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC5.4□□□□□ -1.54
SF3A1Q15459 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC5.4□□□□□ -1.54
SF3A1Q15459 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.4□□□□□ -1.54
SF3A1Q15459 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.4□□□□□ -1.54
SF3A1Q15459 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC5.4□□□□□ -1.54
SF3A1Q15459 AC125611.2-201ENST00000551907 647 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 AC006960.3-201ENST00000561845 705 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC5.4□□□□□ -1.54
SF3A1Q15459 AL022099.1-201ENST00000604551 712 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 AC008277.2-201ENST00000605196 797 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 AL034351.1-201ENST00000605288 668 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 AC026368.1-201ENST00000614934 690 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 uc_338.12-201ENST00000616344 181 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 MIR6130-201ENST00000619419 109 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 AC015967.1-201ENST00000619893 476 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 AC019226.1-201ENST00000625666 515 ntBASIC5.4□□□□□ -1.54
SF3A1Q15459 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SF3A1Q15459 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
SF3A1Q15459 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
SF3A1Q15459 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
SF3A1Q15459 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC5.39□□□□□ -1.55
SF3A1Q15459 AC018529.3-201ENST00000624212 2254 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
SF3A1Q15459 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SF3A1Q15459 RNY1P12-201ENST00000364251 105 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SF3A1Q15459 SNORA20.2-201ENST00000383922 131 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 SNORD96B-201ENST00000386148 79 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 RNU6-882P-201ENST00000391025 103 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 RNU2-62P-201ENST00000410868 191 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC5.39□□□□□ -1.55
SF3A1Q15459 AC119751.6-201ENST00000416712 186 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 GCA-203ENST00000429691 824 ntTSL 3 BASIC5.39□□□□□ -1.55
SF3A1Q15459 FTH1P6-201ENST00000430768 320 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 FCF1P1-201ENST00000432690 571 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC5.39□□□□□ -1.55
SF3A1Q15459 AL359073.1-201ENST00000448036 403 ntBASIC5.39□□□□□ -1.55
SF3A1Q15459 AC079448.1-201ENST00000449377 373 ntBASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms