Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC087312.1-201ENST00000471411 480 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD3P31249 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD3P31249 RPS4XP18-201ENST00000495480 763 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD3P31249 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD3P31249 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD3P31249 HMGB1P29-201ENST00000505659 499 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD3P31249 AC105914.1-201ENST00000511798 226 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 RNU6-445P-201ENST00000516949 107 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 AC107934.1-201ENST00000522215 217 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 DERA-209ENST00000532964 854 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD3P31249 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC3.65□□□□□ -1.83
HOXD3P31249 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD3P31249 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.65□□□□□ -1.83
HOXD3P31249 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD3P31249 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD3P31249 CYCSP40-201ENST00000575927 294 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 UBE2L4-201ENST00000587688 464 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 AC067852.4-201ENST00000590314 478 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 AC245014.2-201ENST00000603689 287 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 AL391646.1-201ENST00000603860 190 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD3P31249 AC246785.4-201ENST00000605374 287 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 AC011816.2-201ENST00000607089 556 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 AL357078.3-201ENST00000607528 618 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD3P31249 OR6R2P-201ENST00000609216 300 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 AL158801.5-201ENST00000623123 465 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 AC091953.2-201ENST00000623979 160 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 AC019226.1-201ENST00000625666 515 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 MIR6830-201ENST00000636015 70 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 OR52H1-202ENST00000641796 1061 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD3P31249 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD3P31249 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.65□□□□□ -1.83
HOXD3P31249 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD3P31249 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD3P31249 AC025574.1-201ENST00000554784 1653 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD3P31249 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
HOXD3P31249 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD3P31249 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD3P31249 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC3.64□□□□□ -1.83
HOXD3P31249 NUP58P1-201ENST00000502546 1738 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD3P31249 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD3P31249 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
HOXD3P31249 AP001486.2-201ENST00000561652 5113 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD3P31249 DHX40P1-201ENST00000588725 1412 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD3P31249 RNU5E-1-201ENST00000362477 120 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 RNY4P14-201ENST00000363656 96 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 RNU4-1-201ENST00000363925 141 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 RNU1-130P-201ENST00000363930 160 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 RNU6-878P-201ENST00000384578 110 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
HOXD3P31249 MTND4LP20-201ENST00000402379 270 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 AL591848.1-201ENST00000413092 322 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD3P31249 MTND3P17-201ENST00000416968 344 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD3P31249 E2F6P2-201ENST00000420708 748 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 AL109913.1-201ENST00000421173 514 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 RPL7P57-201ENST00000423238 740 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 CHIAP3-201ENST00000423668 1133 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD3P31249 AC007283.2-201ENST00000424739 197 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 RSL24D1P6-201ENST00000426934 401 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.64□□□□□ -1.83
HOXD3P31249 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD3P31249 AC002486.1-201ENST00000435098 391 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD3P31249 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXD3P31249 AC007182.2-201ENST00000489251 402 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXD3P31249 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD3P31249 TXNP6-201ENST00000510190 310 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 AC005798.1-201ENST00000513715 387 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 RN7SKP82-201ENST00000516786 223 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 RNU6-1220P-201ENST00000517126 108 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD3P31249 IGLVIV-53-201ENST00000520107 367 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXD3P31249 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD3P31249 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.64□□□□□ -1.83
HOXD3P31249 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD3P31249 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD3P31249 AL110118.1-201ENST00000553543 400 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC3.64□□□□□ -1.83
HOXD3P31249 MIR3167-201ENST00000579623 85 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD3P31249 RN7SL690P-201ENST00000582087 240 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 NRBF2P1-201ENST00000587407 859 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC3.64□□□□□ -1.83
HOXD3P31249 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXD3P31249 RPL12P25-202ENST00000598100 674 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 IGKV2OR2-2-201ENST00000605025 300 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms