Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SMARCA1P28370 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SMARCA1P28370 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SMARCA1P28370 ANKRD62P1-201ENST00000434304 1623 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 AC027290.2-201ENST00000623210 18662 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SMARCA1P28370 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SMARCA1P28370 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SMARCA1P28370 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
SMARCA1P28370 RNU6-297P-201ENST00000384636 107 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 U8.14-201ENST00000390843 143 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SMARCA1P28370 RN7SKP56-201ENST00000410513 331 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 RPL31P45-201ENST00000419532 356 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 RPL21P32-201ENST00000419877 477 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 OFD1P18Y-201ENST00000420889 959 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 EIF4EP1-201ENST00000422311 642 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SMARCA1P28370 AC010975.2-201ENST00000427781 588 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 PSMA2P3-201ENST00000429685 675 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.79□□□□□ -1.64
SMARCA1P28370 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC4.79□□□□□ -1.64
SMARCA1P28370 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.79□□□□□ -1.64
SMARCA1P28370 AL356276.2-201ENST00000435919 558 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.79□□□□□ -1.64
SMARCA1P28370 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.79□□□□□ -1.64
SMARCA1P28370 AC006011.1-201ENST00000442758 349 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 AC114755.5-201ENST00000447760 831 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.79□□□□□ -1.64
SMARCA1P28370 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.79□□□□□ -1.64
SMARCA1P28370 USP9YP34-201ENST00000453983 808 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 RPS7P7-201ENST00000463499 571 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 AC103987.1-201ENST00000473394 348 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 AC010460.1-201ENST00000507087 466 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 AF213884.2-201ENST00000510417 903 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 AP003392.2-201ENST00000527269 208 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC4.79□□□□□ -1.64
SMARCA1P28370 AC068587.4-201ENST00000533893 186 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.79□□□□□ -1.64
SMARCA1P28370 MIR5697-201ENST00000578045 78 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC4.79□□□□□ -1.64
SMARCA1P28370 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.79□□□□□ -1.64
SMARCA1P28370 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC4.79□□□□□ -1.64
SMARCA1P28370 AC091805.2-201ENST00000603848 235 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 PRELID3BP8-201ENST00000604148 295 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 NDUFA8P1-201ENST00000605525 367 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 AC008498.1-201ENST00000613012 531 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 AC013476.2-201ENST00000614456 459 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 AC138932.5-201ENST00000617759 563 ntBASIC4.79□□□□□ -1.64
SMARCA1P28370 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.79□□□□□ -1.64
SMARCA1P28370 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
SMARCA1P28370 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SMARCA1P28370 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SMARCA1P28370 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
SMARCA1P28370 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SMARCA1P28370 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
SMARCA1P28370 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SMARCA1P28370 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SMARCA1P28370 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SMARCA1P28370 RPL23AP57-201ENST00000332361 466 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SMARCA1P28370 SNORA60-201ENST00000362396 134 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 RN7SKP44-201ENST00000363602 316 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 RNU6-343P-201ENST00000364709 104 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.78□□□□□ -1.64
SMARCA1P28370 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC4.78□□□□□ -1.64
SMARCA1P28370 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC4.78□□□□□ -1.64
SMARCA1P28370 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC4.78□□□□□ -1.64
SMARCA1P28370 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.78□□□□□ -1.64
SMARCA1P28370 OR51AB1P-201ENST00000429046 620 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC4.78□□□□□ -1.64
SMARCA1P28370 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.78□□□□□ -1.64
SMARCA1P28370 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC4.78□□□□□ -1.64
SMARCA1P28370 AL022238.1-201ENST00000442557 355 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.78□□□□□ -1.64
SMARCA1P28370 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC4.78□□□□□ -1.64
SMARCA1P28370 SRRM1P2-201ENST00000464531 1192 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 FTH1P2-201ENST00000466086 412 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.78□□□□□ -1.64
SMARCA1P28370 RN7SL585P-201ENST00000470538 280 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 AF213884.1-201ENST00000488102 463 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.78□□□□□ -1.64
SMARCA1P28370 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.78□□□□□ -1.64
SMARCA1P28370 DUXAP2-201ENST00000519198 589 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.78□□□□□ -1.64
SMARCA1P28370 OR8L1P-201ENST00000534005 955 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC4.78□□□□□ -1.64
SMARCA1P28370 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
SMARCA1P28370 OR6C73P-201ENST00000546432 358 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC4.78□□□□□ -1.64
SMARCA1P28370 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC4.78□□□□□ -1.64
SMARCA1P28370 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SMARCA1P28370 AC020910.2-201ENST00000603635 610 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 SEPT7P9-203ENST00000604116 343 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 AC010680.3-201ENST00000604215 520 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 AL591034.3-201ENST00000605511 685 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 AC006566.1-201ENST00000608943 513 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 AL031666.3-201ENST00000609320 1006 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 AC015813.4-201ENST00000610469 179 ntBASIC4.78□□□□□ -1.64
SMARCA1P28370 AL589743.7-201ENST00000612637 233 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms