Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PAPPA-AS1-201ENST00000445861 2450 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.56
COL8A1P27658 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC5.3□□□□□ -1.56
COL8A1P27658 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC5.3□□□□□ -1.56
COL8A1P27658 Y_RNA.16-201ENST00000362421 102 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 Y_RNA.76-201ENST00000362931 109 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 Y_RNA.151-201ENST00000363566 112 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 RNU6-960P-201ENST00000364056 120 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 Y_RNA.273-201ENST00000364703 102 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 Y_RNA.383-201ENST00000383855 97 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 MIR649-201ENST00000384843 97 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 RNU6ATAC15P-201ENST00000408279 121 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 U3.39-201ENST00000408569 239 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 RPL23AP27-201ENST00000415161 451 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.3□□□□□ -1.56
COL8A1P27658 AL445928.1-201ENST00000435545 222 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 AL390119.1-201ENST00000440329 312 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC5.3□□□□□ -1.56
COL8A1P27658 AP001992.1-205ENST00000462248 379 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.3□□□□□ -1.56
COL8A1P27658 RN7SL547P-201ENST00000490793 290 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 RN7SL57P-201ENST00000493687 290 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC5.3□□□□□ -1.56
COL8A1P27658 AL359273.1-201ENST00000510918 627 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.3□□□□□ -1.56
COL8A1P27658 AC092436.3-201ENST00000511788 257 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 GSTP1P1-201ENST00000548078 319 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 DUX4L52-201ENST00000549363 777 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 LSM6P2-201ENST00000552208 177 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 SULT1C2P2-201ENST00000562517 294 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC5.3□□□□□ -1.56
COL8A1P27658 SNORA70D-201ENST00000578836 135 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.3□□□□□ -1.56
COL8A1P27658 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC5.3□□□□□ -1.56
COL8A1P27658 AC008521.1-201ENST00000587471 187 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 AL138889.2-201ENST00000603883 242 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC5.3□□□□□ -1.56
COL8A1P27658 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC5.3□□□□□ -1.56
COL8A1P27658 AC104465.1-201ENST00000611365 139 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 AL596245.1-201ENST00000618994 362 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 MIR7159-201ENST00000620587 66 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL8A1P27658 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.3□□□□□ -1.56
COL8A1P27658 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL8A1P27658 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL8A1P27658 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC5.3□□□□□ -1.56
COL8A1P27658 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL8A1P27658 AC090220.1-201ENST00000593078 1699 ntBASIC5.3□□□□□ -1.56
COL8A1P27658 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL8A1P27658 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
COL8A1P27658 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL8A1P27658 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL8A1P27658 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC5.29□□□□□ -1.56
COL8A1P27658 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
COL8A1P27658 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL8A1P27658 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL8A1P27658 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL8A1P27658 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL8A1P27658 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC5.29□□□□□ -1.56
COL8A1P27658 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL8A1P27658 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL8A1P27658 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL8A1P27658 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.29□□□□□ -1.56
COL8A1P27658 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
COL8A1P27658 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
COL8A1P27658 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
COL8A1P27658 SNRPEP6-201ENST00000407465 277 ntBASIC5.29□□□□□ -1.56
COL8A1P27658 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.29□□□□□ -1.56
COL8A1P27658 AL096829.1-201ENST00000413677 457 ntBASIC5.29□□□□□ -1.56
COL8A1P27658 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC5.29□□□□□ -1.56
COL8A1P27658 SRSF1P1-201ENST00000424058 520 ntBASIC5.29□□□□□ -1.56
COL8A1P27658 CEACAMP7-201ENST00000444105 496 ntBASIC5.29□□□□□ -1.56
COL8A1P27658 BTF3P6-201ENST00000448054 499 ntBASIC5.29□□□□□ -1.56
COL8A1P27658 AL513124.1-201ENST00000450410 614 ntBASIC5.29□□□□□ -1.56
COL8A1P27658 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC5.29□□□□□ -1.56
COL8A1P27658 RN7SL72P-201ENST00000460697 269 ntBASIC5.29□□□□□ -1.56
COL8A1P27658 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.29□□□□□ -1.56
COL8A1P27658 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC5.29□□□□□ -1.56
COL8A1P27658 Y_RNA.687-201ENST00000516558 91 ntBASIC5.29□□□□□ -1.56
COL8A1P27658 SOD1P3-201ENST00000518682 454 ntBASIC5.29□□□□□ -1.56
COL8A1P27658 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC5.29□□□□□ -1.56
COL8A1P27658 HMGN2P6-201ENST00000551091 273 ntBASIC5.29□□□□□ -1.56
COL8A1P27658 RN7SL708P-201ENST00000580952 299 ntBASIC5.29□□□□□ -1.56
COL8A1P27658 MIR4436B2-201ENST00000581415 91 ntBASIC5.29□□□□□ -1.56
COL8A1P27658 MIR4436B1-201ENST00000583272 91 ntBASIC5.29□□□□□ -1.56
COL8A1P27658 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC5.29□□□□□ -1.56
COL8A1P27658 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC5.29□□□□□ -1.56
COL8A1P27658 AC006363.1-201ENST00000603806 463 ntBASIC5.29□□□□□ -1.56
COL8A1P27658 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
COL8A1P27658 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC5.29□□□□□ -1.56
COL8A1P27658 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL8A1P27658 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL8A1P27658 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC5.29□□□□□ -1.56
COL8A1P27658 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
COL8A1P27658 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC5.29□□□□□ -1.56
COL8A1P27658 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
COL8A1P27658 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL8A1P27658 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
COL8A1P27658 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL8A1P27658 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms