Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC125257.1-201ENST00000560400 2930 ntBASIC4.46□□□□□ -1.69
VPS4BO75351 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.46□□□□□ -1.69
VPS4BO75351 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.69
VPS4BO75351 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS4BO75351 AC017104.4-201ENST00000636283 1592 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 AC095050.2-201ENST00000510748 1458 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
VPS4BO75351 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS4BO75351 AL161781.1-201ENST00000354277 403 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 RNU1-94P-201ENST00000362627 173 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 RNU1-130P-201ENST00000363930 160 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 RNU1-64P-201ENST00000365443 163 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 RNU6-878P-201ENST00000384578 110 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 CIR1P3-201ENST00000405137 479 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS4BO75351 RNU4-25P-201ENST00000410569 230 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS4BO75351 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.46□□□□□ -1.7
VPS4BO75351 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS4BO75351 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.46□□□□□ -1.7
VPS4BO75351 RPL17P49-201ENST00000443728 411 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS4BO75351 ISCUP1-201ENST00000454451 448 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS4BO75351 RPL7AP28-201ENST00000464513 571 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 PLGLA-201ENST00000465668 449 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 AP001025.2-201ENST00000490908 477 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 HMGB1P21-201ENST00000502313 581 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC4.46□□□□□ -1.7
VPS4BO75351 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS4BO75351 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 AC093853.1-201ENST00000515689 483 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 RN7SKP82-201ENST00000516786 223 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS4BO75351 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS4BO75351 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS4BO75351 HMGB3P26-201ENST00000560051 582 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS4BO75351 AL157394.1-201ENST00000562983 1224 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS4BO75351 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS4BO75351 NRBF2P1-201ENST00000587407 859 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 AP000860.1-201ENST00000605250 559 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 MIR92B-201ENST00000607575 96 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 AC023043.4-201ENST00000612081 449 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 AC009237.17-201ENST00000618111 748 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 AL596245.1-201ENST00000618994 362 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 MIR7154-201ENST00000620673 73 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 AL356321.1-201ENST00000621360 228 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 AL161637.1-201ENST00000622380 412 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS4BO75351 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS4BO75351 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS4BO75351 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS4BO75351 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS4BO75351 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS4BO75351 AC010928.1-201ENST00000592477 1447 ntBASIC4.46□□□□□ -1.7
VPS4BO75351 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS4BO75351 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS4BO75351 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS4BO75351 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
VPS4BO75351 AL590240.1-201ENST00000334118 313 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 RNU1-44P-201ENST00000384453 163 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS4BO75351 MTATP6P27-201ENST00000416987 621 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 RPL31P45-201ENST00000419532 356 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 AL592293.2-201ENST00000422292 996 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 RPL23AP1-201ENST00000428990 471 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS4BO75351 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS4BO75351 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS4BO75351 AC122718.1-201ENST00000439448 744 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS4BO75351 AL162591.2-201ENST00000449634 317 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS4BO75351 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS4BO75351 AP001992.1-205ENST00000462248 379 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 FAM133DP-201ENST00000464802 691 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 AC010618.1-201ENST00000469924 477 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS4BO75351 AC022034.3-201ENST00000471393 478 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 AC109327.1-201ENST00000471666 403 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 SCARNA22-201ENST00000503991 125 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 AC006390.1-201ENST00000508068 283 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 AC008694.2-201ENST00000517591 306 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS4BO75351 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS4BO75351 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS4BO75351 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS4BO75351 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS4BO75351 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS4BO75351 AC092325.1-201ENST00000566449 554 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS4BO75351 AC034268.2-201ENST00000571784 482 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 MTND6P33-201ENST00000571794 183 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 CKS1BP3-201ENST00000600888 237 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS4BO75351 AL023881.1-201ENST00000621088 301 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 AL157786.1-207ENST00000627771 695 ntBASIC4.45□□□□□ -1.7
VPS4BO75351 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms