Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 IGLVI-42-201ENST00000522485 381 ntBASIC9.77□□□□□ -0.85
MSH5O43196 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC9.77□□□□□ -0.85
MSH5O43196 RN7SL32P-201ENST00000580514 281 ntBASIC9.77□□□□□ -0.85
MSH5O43196 AC008738.6-201ENST00000604605 569 ntTSL 4 BASIC9.77□□□□□ -0.85
MSH5O43196 AL121950.1-201ENST00000624993 2077 ntBASIC9.77□□□□□ -0.85
MSH5O43196 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC9.77□□□□□ -0.85
MSH5O43196 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.85
MSH5O43196 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
MSH5O43196 AC015871.3-201ENST00000618835 2261 ntBASIC9.77□□□□□ -0.85
MSH5O43196 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
MSH5O43196 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC9.77□□□□□ -0.85
MSH5O43196 MEF2C-232ENST00000629612 2851 ntTSL 5 BASIC9.77□□□□□ -0.85
MSH5O43196 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC9.77□□□□□ -0.85
MSH5O43196 DDX24-201ENST00000330836 2738 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
MSH5O43196 ZNF502-201ENST00000296091 3270 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
MSH5O43196 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC9.76□□□□□ -0.85
MSH5O43196 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
MSH5O43196 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
MSH5O43196 TMEM75-201ENST00000624314 2165 ntBASIC9.76□□□□□ -0.85
MSH5O43196 PPARA-203ENST00000407236 9995 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
MSH5O43196 MIR367-201ENST00000362299 68 ntBASIC9.76□□□□□ -0.85
MSH5O43196 MIR191-201ENST00000384873 92 ntBASIC9.76□□□□□ -0.85
MSH5O43196 MIR487A-201ENST00000385009 80 ntBASIC9.76□□□□□ -0.85
MSH5O43196 MTND4LP19-201ENST00000403051 166 ntBASIC9.76□□□□□ -0.85
MSH5O43196 GH2-202ENST00000423893 819 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
MSH5O43196 CYCSP32-201ENST00000440548 321 ntBASIC9.76□□□□□ -0.85
MSH5O43196 RPL39P40-201ENST00000445481 146 ntBASIC9.76□□□□□ -0.85
MSH5O43196 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC9.76□□□□□ -0.85
MSH5O43196 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC9.76□□□□□ -0.85
MSH5O43196 GH2-204ENST00000456543 794 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
MSH5O43196 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC9.76□□□□□ -0.85
MSH5O43196 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC9.76□□□□□ -0.85
MSH5O43196 OR7E96P-201ENST00000530816 976 ntBASIC9.76□□□□□ -0.85
MSH5O43196 NDUFA3P2-201ENST00000531434 232 ntBASIC9.76□□□□□ -0.85
MSH5O43196 AC023827.2-201ENST00000566880 1061 ntBASIC9.76□□□□□ -0.85
MSH5O43196 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC9.76□□□□□ -0.85
MSH5O43196 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC9.76□□□□□ -0.85
MSH5O43196 JAML-213ENST00000640745 951 ntTSL 5 BASIC9.76□□□□□ -0.85
MSH5O43196 GTF2H3-212ENST00000543341 3329 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
MSH5O43196 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC9.76□□□□□ -0.85
MSH5O43196 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC9.76□□□□□ -0.85
MSH5O43196 IL18RAP-202ENST00000409369 1890 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
MSH5O43196 PPHLN1-207ENST00000432191 3377 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
MSH5O43196 NPIPB4-203ENST00000415645 3606 ntAPPRIS P1 TSL 5 BASIC9.76□□□□□ -0.85
MSH5O43196 MFSD8-218ENST00000641186 4448 ntBASIC9.76□□□□□ -0.85
MSH5O43196 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC9.76□□□□□ -0.85
MSH5O43196 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC9.76□□□□□ -0.85
MSH5O43196 IL33-202ENST00000417746 2327 ntTSL 2 BASIC9.76□□□□□ -0.85
MSH5O43196 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
MSH5O43196 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
MSH5O43196 HELB-201ENST00000247815 12866 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
MSH5O43196 IARS-213ENST00000627121 4587 ntTSL 5 BASIC9.75□□□□□ -0.85
MSH5O43196 KAT14-202ENST00000435364 3618 ntAPPRIS P2 TSL 1 (best) BASIC9.75□□□□□ -0.85
MSH5O43196 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC9.75□□□□□ -0.85
MSH5O43196 KIDINS220-206ENST00000473731 7248 ntTSL 5 BASIC9.75□□□□□ -0.85
MSH5O43196 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
MSH5O43196 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
MSH5O43196 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
MSH5O43196 SNORD115-13-201ENST00000363358 82 ntBASIC9.75□□□□□ -0.85
MSH5O43196 SNORD115-16-201ENST00000363887 82 ntBASIC9.75□□□□□ -0.85
MSH5O43196 SNORA63D-201ENST00000364359 132 ntBASIC9.75□□□□□ -0.85
MSH5O43196 SNORD115-1-201ENST00000364961 82 ntBASIC9.75□□□□□ -0.85
MSH5O43196 RPL36P18-201ENST00000419316 318 ntBASIC9.75□□□□□ -0.85
MSH5O43196 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC9.75□□□□□ -0.85
MSH5O43196 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC9.75□□□□□ -0.85
MSH5O43196 AL021397.1-201ENST00000451806 248 ntBASIC9.75□□□□□ -0.85
MSH5O43196 AC084878.1-201ENST00000480555 648 ntBASIC9.75□□□□□ -0.85
MSH5O43196 MRPS33P2-201ENST00000507850 322 ntBASIC9.75□□□□□ -0.85
MSH5O43196 AC068339.1-201ENST00000526965 141 ntBASIC9.75□□□□□ -0.85
MSH5O43196 AC140658.6-201ENST00000603958 201 ntBASIC9.75□□□□□ -0.85
MSH5O43196 ALPK1-201ENST00000177648 4537 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
MSH5O43196 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC9.75□□□□□ -0.85
MSH5O43196 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
MSH5O43196 SERPINA6-201ENST00000341584 1534 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
MSH5O43196 SLC26A9-202ENST00000367134 4616 ntTSL 5 BASIC9.75□□□□□ -0.85
MSH5O43196 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC9.75□□□□□ -0.85
MSH5O43196 SOX6-211ENST00000528429 2656 ntAPPRIS ALT2 TSL 1 (best) BASIC9.75□□□□□ -0.85
MSH5O43196 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC9.75□□□□□ -0.85
MSH5O43196 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
MSH5O43196 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC9.74□□□□□ -0.85
MSH5O43196 NUMB-214ENST00000555238 3588 ntAPPRIS ALT1 TSL 1 (best) BASIC9.74□□□□□ -0.85
MSH5O43196 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC9.74□□□□□ -0.85
MSH5O43196 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
MSH5O43196 AC006058.1-201ENST00000568686 5067 ntBASIC9.74□□□□□ -0.85
MSH5O43196 ZMYND8-216ENST00000471951 4053 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
MSH5O43196 TTI1-201ENST00000373447 3825 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
MSH5O43196 AC008753.1-201ENST00000423096 284 ntBASIC9.74□□□□□ -0.85
MSH5O43196 RN7SL790P-201ENST00000474043 298 ntBASIC9.74□□□□□ -0.85
MSH5O43196 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC9.74□□□□□ -0.85
MSH5O43196 AL445187.1-201ENST00000502685 260 ntBASIC9.74□□□□□ -0.85
MSH5O43196 RNU6-58P-201ENST00000517143 103 ntBASIC9.74□□□□□ -0.85
MSH5O43196 AC107952.1-201ENST00000524200 376 ntBASIC9.74□□□□□ -0.85
MSH5O43196 ANKRD20A19P-203ENST00000602724 295 ntBASIC9.74□□□□□ -0.85
MSH5O43196 CACNB2-213ENST00000612134 3825 ntTSL 5 BASIC9.74□□□□□ -0.85
MSH5O43196 uc_338.37-201ENST00000620113 186 ntBASIC9.74□□□□□ -0.85
MSH5O43196 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC9.74□□□□□ -0.85
MSH5O43196 PSMC2-203ENST00000435765 3054 ntAPPRIS P1 TSL 5 BASIC9.74□□□□□ -0.85
MSH5O43196 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC9.74□□□□□ -0.85
MSH5O43196 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
MSH5O43196 LL22NC03-63E9.3-201ENST00000407120 3111 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Retrieved 100 of 98,524 protein–RNA pairs in 346.8 ms