Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AC106052.1-201ENST00000608029 497 ntBASIC3.4□□□□□ -1.87
ATG4BQ9Y4P1 AC006329.2-201ENST00000611491 394 ntBASIC3.4□□□□□ -1.87
ATG4BQ9Y4P1 AC023158.2-201ENST00000614876 543 ntBASIC3.4□□□□□ -1.87
ATG4BQ9Y4P1 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.4□□□□□ -1.87
ATG4BQ9Y4P1 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.4□□□□□ -1.87
ATG4BQ9Y4P1 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.4□□□□□ -1.87
ATG4BQ9Y4P1 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.4□□□□□ -1.87
ATG4BQ9Y4P1 AL034408.1-202ENST00000636088 415 ntBASIC3.4□□□□□ -1.87
ATG4BQ9Y4P1 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
ATG4BQ9Y4P1 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.4□□□□□ -1.87
ATG4BQ9Y4P1 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
ATG4BQ9Y4P1 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.4□□□□□ -1.87
ATG4BQ9Y4P1 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
ATG4BQ9Y4P1 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.4□□□□□ -1.87
ATG4BQ9Y4P1 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 MTCO1P23-201ENST00000415223 1526 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 RNU6-1249P-201ENST00000363237 111 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 RNU6-413P-201ENST00000384115 107 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 RNU6-906P-201ENST00000384700 70 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 MIR449B-201ENST00000384995 97 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 RNA5SP171-201ENST00000391071 115 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 U3.29-201ENST00000391296 212 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AL136310.1-201ENST00000404926 654 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 RNU4-78P-201ENST00000410940 126 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 RPL30P2-201ENST00000414021 291 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 RAD23BP2-201ENST00000416003 1207 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 SYF2P2-201ENST00000417620 583 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AC012065.2-201ENST00000421295 375 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AC006989.1-201ENST00000427212 131 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 RPL23AP76-201ENST00000441860 458 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 HMGB3P8-201ENST00000449709 577 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AC084357.1-201ENST00000473404 255 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 RNU6-579P-201ENST00000516879 102 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 EEF1B2P4-201ENST00000551398 348 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AADACP1-206ENST00000561502 1193 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AC105148.1-201ENST00000604961 409 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AC009974.1-201ENST00000608881 455 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AC092650.2-201ENST00000619984 902 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AC022509.4-201ENST00000621404 572 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AC092628.2-201ENST00000622492 339 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AC092184.1-201ENST00000625042 715 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 AC109315.1-201ENST00000584143 1347 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 CEP170P1-201ENST00000502249 4587 ntBASIC3.39□□□□□ -1.87
ATG4BQ9Y4P1 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 RNU6-600P-201ENST00000362524 99 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 Y_RNA.25-201ENST00000362528 102 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 RNU6-216P-201ENST00000363282 104 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 U3.39-201ENST00000408569 239 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 TOMM22P1-201ENST00000418578 312 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC069157.1-201ENST00000421749 137 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AL445669.2-201ENST00000454425 421 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 PLGLA-201ENST00000465668 449 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AL049830.2-201ENST00000480072 201 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 RPS4XP13-201ENST00000483219 789 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 RPS3AP50-201ENST00000487064 803 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AL024509.2-201ENST00000493462 493 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC134050.1-201ENST00000495088 933 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC010460.2-201ENST00000509054 677 ntBASIC3.38□□□□□ -1.87
ATG4BQ9Y4P1 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms