Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC133134.1-201ENST00000466800 359 ntBASIC2.34□□□□□ -2.04
SCN3AQ9NY46 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.34□□□□□ -2.04
SCN3AQ9NY46 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.34□□□□□ -2.04
SCN3AQ9NY46 AC005912.1-201ENST00000495392 255 ntBASIC2.34□□□□□ -2.04
SCN3AQ9NY46 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.34□□□□□ -2.04
SCN3AQ9NY46 SNORD116-30-201ENST00000516468 85 ntBASIC2.34□□□□□ -2.04
SCN3AQ9NY46 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
SCN3AQ9NY46 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC2.34□□□□□ -2.04
SCN3AQ9NY46 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC2.34□□□□□ -2.04
SCN3AQ9NY46 OR6C73P-201ENST00000546432 358 ntBASIC2.34□□□□□ -2.04
SCN3AQ9NY46 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC2.34□□□□□ -2.04
SCN3AQ9NY46 AL451074.6-201ENST00000608512 729 ntBASIC2.34□□□□□ -2.04
SCN3AQ9NY46 AP005212.4-201ENST00000614206 710 ntBASIC2.34□□□□□ -2.04
SCN3AQ9NY46 MIR7973-1-201ENST00000614683 76 ntBASIC2.34□□□□□ -2.04
SCN3AQ9NY46 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
SCN3AQ9NY46 RNU4-82P-201ENST00000362443 140 ntBASIC2.33□□□□□ -2.04
SCN3AQ9NY46 RNVU1-3-201ENST00000364313 161 ntBASIC2.33□□□□□ -2.04
SCN3AQ9NY46 RNU6-1251P-201ENST00000364502 107 ntBASIC2.33□□□□□ -2.04
SCN3AQ9NY46 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
SCN3AQ9NY46 AL359511.1-201ENST00000402970 211 ntBASIC2.33□□□□□ -2.04
SCN3AQ9NY46 AL139095.1-201ENST00000404326 391 ntBASIC2.33□□□□□ -2.04
SCN3AQ9NY46 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC2.33□□□□□ -2.04
SCN3AQ9NY46 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.33□□□□□ -2.04
SCN3AQ9NY46 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.33□□□□□ -2.04
SCN3AQ9NY46 RNU4-60P-201ENST00000517239 135 ntBASIC2.33□□□□□ -2.04
SCN3AQ9NY46 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
SCN3AQ9NY46 AC023043.3-201ENST00000593113 385 ntBASIC2.33□□□□□ -2.04
SCN3AQ9NY46 AP003117.2-201ENST00000606010 545 ntBASIC2.33□□□□□ -2.04
SCN3AQ9NY46 IGHVIII-44-202ENST00000636235 289 ntBASIC2.33□□□□□ -2.04
SCN3AQ9NY46 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC2.33□□□□□ -2.04
SCN3AQ9NY46 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.33□□□□□ -2.04
SCN3AQ9NY46 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
SCN3AQ9NY46 HSP90AA4P-202ENST00000506915 2228 ntBASIC2.33□□□□□ -2.04
SCN3AQ9NY46 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AC096656.1-201ENST00000623826 1364 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 DEFA7P-201ENST00000382676 285 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 SNORA41-201ENST00000384675 132 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 MIR153-1-201ENST00000384914 90 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 SNORD65-201ENST00000391079 73 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AL513175.2-201ENST00000422071 443 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AC104389.3-201ENST00000445629 235 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 RPS27P27-201ENST00000498779 255 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AC008565.1-201ENST00000509046 885 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 HMGB1P41-201ENST00000520234 440 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 CKS1BP1-201ENST00000555221 240 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AC010928.3-201ENST00000587712 541 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AC010149.2-201ENST00000637608 315 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 ELF2P3-201ENST00000445099 1506 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 RNA5SP432-201ENST00000362480 116 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 SNORA26.7-201ENST00000391288 122 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AL162578.1-201ENST00000406202 378 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 BTF3P7-201ENST00000407097 488 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 MTND2P16-201ENST00000419987 799 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 RPL7P36-201ENST00000444633 681 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 FTH1P25-201ENST00000447665 469 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 TPMTP4-201ENST00000450749 678 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 OR6C72P-201ENST00000451403 892 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 ACTR6P1-201ENST00000514311 1104 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 RN7SKP283-201ENST00000517197 270 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 ZNF192P1-203ENST00000565888 810 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AC010615.3-201ENST00000597319 394 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AC009159.1-201ENST00000618386 642 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
SCN3AQ9NY46 ZNF90P1-201ENST00000480493 1951 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 AL157700.1-201ENST00000561973 1432 ntBASIC2.32□□□□□ -2.04
SCN3AQ9NY46 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.31□□□□□ -2.04
SCN3AQ9NY46 AC117529.2-201ENST00000512159 2068 ntBASIC2.31□□□□□ -2.04
SCN3AQ9NY46 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
SCN3AQ9NY46 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.31□□□□□ -2.04
SCN3AQ9NY46 RNA5SP80-201ENST00000410475 111 ntBASIC2.31□□□□□ -2.04
SCN3AQ9NY46 RNU2-71P-201ENST00000411395 189 ntBASIC2.31□□□□□ -2.04
SCN3AQ9NY46 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC2.31□□□□□ -2.04
SCN3AQ9NY46 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.31□□□□□ -2.04
SCN3AQ9NY46 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC2.31□□□□□ -2.04
SCN3AQ9NY46 SNORA31.1-201ENST00000515993 133 ntBASIC2.31□□□□□ -2.04
SCN3AQ9NY46 SNORA31.5-201ENST00000516190 133 ntBASIC2.31□□□□□ -2.04
SCN3AQ9NY46 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC2.31□□□□□ -2.04
SCN3AQ9NY46 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC2.31□□□□□ -2.04
SCN3AQ9NY46 CD69-203ENST00000536709 1020 ntTSL 2 BASIC2.31□□□□□ -2.04
SCN3AQ9NY46 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC2.31□□□□□ -2.04
SCN3AQ9NY46 AC010198.2-201ENST00000550612 259 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms