Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.03□□□□□ -1.76
NPAS1Q99742 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC4.03□□□□□ -1.76
NPAS1Q99742 AC078795.2-201ENST00000602835 1252 ntBASIC4.03□□□□□ -1.76
NPAS1Q99742 AC015871.2-201ENST00000603605 948 ntBASIC4.03□□□□□ -1.76
NPAS1Q99742 AL031176.1-201ENST00000604554 466 ntBASIC4.03□□□□□ -1.76
NPAS1Q99742 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.03□□□□□ -1.76
NPAS1Q99742 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC4.03□□□□□ -1.76
NPAS1Q99742 AC091905.2-201ENST00000623143 306 ntBASIC4.03□□□□□ -1.76
NPAS1Q99742 AC079597.1-201ENST00000624306 508 ntBASIC4.03□□□□□ -1.76
NPAS1Q99742 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.03□□□□□ -1.76
NPAS1Q99742 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
NPAS1Q99742 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.03□□□□□ -1.76
NPAS1Q99742 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
NPAS1Q99742 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
NPAS1Q99742 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
NPAS1Q99742 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
NPAS1Q99742 AC025031.4-201ENST00000621248 3271 ntBASIC4.03□□□□□ -1.77
NPAS1Q99742 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.03□□□□□ -1.77
NPAS1Q99742 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
NPAS1Q99742 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.02□□□□□ -1.77
NPAS1Q99742 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
NPAS1Q99742 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
NPAS1Q99742 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
NPAS1Q99742 MIR513A2-201ENST00000385249 127 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 RNU2-47P-201ENST00000410649 186 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 RN7SKP235-201ENST00000410662 305 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 ELOCP19-201ENST00000411919 318 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 RPS20P14-201ENST00000412545 360 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC4.02□□□□□ -1.77
NPAS1Q99742 USP9YP14-201ENST00000430663 563 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.02□□□□□ -1.77
NPAS1Q99742 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC4.02□□□□□ -1.77
NPAS1Q99742 AC114495.1-201ENST00000441274 436 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 AL353691.1-201ENST00000451332 387 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 AC006463.2-201ENST00000473326 348 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 LARP1BP2-201ENST00000486594 519 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
NPAS1Q99742 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
NPAS1Q99742 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC4.02□□□□□ -1.77
NPAS1Q99742 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
NPAS1Q99742 AC109464.2-201ENST00000510242 943 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 PPBPP1-201ENST00000510807 373 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 KCTD9P2-201ENST00000512203 1013 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
NPAS1Q99742 RNU4-60P-201ENST00000517239 135 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 IGLV3-26-201ENST00000520756 302 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.02□□□□□ -1.77
NPAS1Q99742 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC4.02□□□□□ -1.77
NPAS1Q99742 SETP2-201ENST00000553886 926 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 AC245505.1-201ENST00000556398 224 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC4.02□□□□□ -1.77
NPAS1Q99742 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC4.02□□□□□ -1.77
NPAS1Q99742 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.02□□□□□ -1.77
NPAS1Q99742 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.02□□□□□ -1.77
NPAS1Q99742 AC091805.2-201ENST00000603848 235 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 AC011451.2-201ENST00000604303 598 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 AL139286.1-201ENST00000604465 483 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 AC008966.2-201ENST00000606157 453 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 OR6R2P-201ENST00000609216 300 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 AC008121.2-201ENST00000614647 523 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 AC015540.1-201ENST00000615828 501 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 AC009509.4-201ENST00000619202 509 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 MIR4727-201ENST00000622232 55 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
NPAS1Q99742 AC110994.2-201ENST00000635481 492 ntBASIC4.02□□□□□ -1.77
NPAS1Q99742 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.02□□□□□ -1.77
NPAS1Q99742 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
NPAS1Q99742 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
NPAS1Q99742 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
NPAS1Q99742 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.02□□□□□ -1.77
NPAS1Q99742 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.01□□□□□ -1.77
NPAS1Q99742 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.01□□□□□ -1.77
NPAS1Q99742 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.01□□□□□ -1.77
NPAS1Q99742 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
NPAS1Q99742 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC4.01□□□□□ -1.77
NPAS1Q99742 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
NPAS1Q99742 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
NPAS1Q99742 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.01□□□□□ -1.77
NPAS1Q99742 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
NPAS1Q99742 AC125257.1-201ENST00000560400 2930 ntBASIC4.01□□□□□ -1.77
NPAS1Q99742 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.01□□□□□ -1.77
NPAS1Q99742 RNU6-1249P-201ENST00000363237 111 ntBASIC4.01□□□□□ -1.77
NPAS1Q99742 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.01□□□□□ -1.77
NPAS1Q99742 RNU11-4P-201ENST00000391149 133 ntBASIC4.01□□□□□ -1.77
NPAS1Q99742 SDHCP2-201ENST00000398565 501 ntBASIC4.01□□□□□ -1.77
NPAS1Q99742 RPS20P2-201ENST00000402520 389 ntBASIC4.01□□□□□ -1.77
NPAS1Q99742 MRPL42P2-201ENST00000403169 426 ntBASIC4.01□□□□□ -1.77
NPAS1Q99742 Y_RNA.608-201ENST00000410647 95 ntBASIC4.01□□□□□ -1.77
NPAS1Q99742 AC092447.6-201ENST00000414578 210 ntBASIC4.01□□□□□ -1.77
NPAS1Q99742 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC4.01□□□□□ -1.77
NPAS1Q99742 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC4.01□□□□□ -1.77
NPAS1Q99742 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC4.01□□□□□ -1.77
NPAS1Q99742 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.01□□□□□ -1.77
NPAS1Q99742 AC108734.1-201ENST00000439549 399 ntBASIC4.01□□□□□ -1.77
NPAS1Q99742 CBX1P1-201ENST00000440184 427 ntBASIC4.01□□□□□ -1.77
NPAS1Q99742 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC4.01□□□□□ -1.77
NPAS1Q99742 AC244505.5-201ENST00000443639 207 ntBASIC4.01□□□□□ -1.77
NPAS1Q99742 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.01□□□□□ -1.77
NPAS1Q99742 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC4.01□□□□□ -1.77
NPAS1Q99742 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms