Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 RNU6-562P-201ENST00000362731 107 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 Y_RNA.187-201ENST00000363918 113 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 U3.15-201ENST00000365398 212 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 RNU6-45P-201ENST00000384471 107 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 RNU6-601P-201ENST00000384540 107 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 RNA5SP91-201ENST00000390902 119 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 VDAC1P9-201ENST00000412766 841 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 MRPL53P1-201ENST00000414323 319 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 AC245054.2-201ENST00000415639 319 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 RPL34P3-201ENST00000421454 338 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 ATP5A1P8-201ENST00000423669 1291 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 SKA2P1-201ENST00000425592 390 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 BX323845.3-201ENST00000428215 527 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 Z82205.1-201ENST00000428456 297 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 HNRNPA1P18-201ENST00000433537 927 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 GAS5-218ENST00000448718 565 ntTSL 2 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 MTND1P17-201ENST00000448961 204 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 HLA-DPA3-207ENST00000454398 229 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 AC087884.1-201ENST00000469738 328 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 AC010285.1-201ENST00000470580 392 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 HSPE1P6-201ENST00000479457 291 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 AC104136.1-201ENST00000512969 394 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 RNU6-1069P-201ENST00000516612 133 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 RNU6-1213P-201ENST00000517075 94 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 IGKV2D-23-201ENST00000518179 286 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 HMGN2P36-201ENST00000529541 409 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 AC006270.2-201ENST00000578523 652 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 FAM27E4-201ENST00000605259 342 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 AL133481.2-203ENST00000607558 139 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 MIR6128-201ENST00000615528 109 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 AC244517.12-201ENST00000623581 663 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 AL137141.1-201ENST00000624622 4836 ntBASIC4.49□□□□□ -1.69
CCDC140Q96MF4 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CCDC140Q96MF4 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AL365440.1-201ENST00000436135 2167 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 RNU6-173P-201ENST00000364215 104 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 RN7SKP269-201ENST00000365545 319 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 Y_RNA.482-201ENST00000384377 111 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 RNU6-817P-201ENST00000391083 104 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 RPL11P3-201ENST00000395256 523 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AL445189.1-201ENST00000405722 338 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 MIR1203-201ENST00000408812 85 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 RN7SKP279-201ENST00000411383 298 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 RPL26P29-201ENST00000415623 438 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 GAPDHP48-201ENST00000436626 961 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 FGF7P3-201ENST00000454645 303 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 Y_RNA.653-201ENST00000459091 95 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 ACA64.1-201ENST00000459171 127 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AL163540.1-201ENST00000485382 386 ntBASIC4.48□□□□□ -1.69
CCDC140Q96MF4 AC009901.1-201ENST00000506703 541 ntBASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms