Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 MIR3691-201ENST00000578066 90 ntBASIC6.3□□□□□ -1.4
HLA-CQ95604 AL160281.1-201ENST00000605307 311 ntBASIC6.3□□□□□ -1.4
HLA-CQ95604 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC6.3□□□□□ -1.4
HLA-CQ95604 TEX41-280ENST00000629185 591 ntTSL 5 BASIC6.3□□□□□ -1.4
HLA-CQ95604 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HLA-CQ95604 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HLA-CQ95604 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.3□□□□□ -1.4
HLA-CQ95604 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.3□□□□□ -1.4
HLA-CQ95604 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HLA-CQ95604 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
HLA-CQ95604 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HLA-CQ95604 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HLA-CQ95604 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HLA-CQ95604 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.3□□□□□ -1.4
HLA-CQ95604 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC6.3□□□□□ -1.4
HLA-CQ95604 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HLA-CQ95604 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HLA-CQ95604 AC010624.4-201ENST00000597606 1351 ntBASIC6.3□□□□□ -1.4
HLA-CQ95604 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.3□□□□□ -1.4
HLA-CQ95604 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HLA-CQ95604 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC6.29□□□□□ -1.4
HLA-CQ95604 PROS2P-201ENST00000474651 1951 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 AC005183.1-201ENST00000603687 1979 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
HLA-CQ95604 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HLA-CQ95604 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC6.29□□□□□ -1.4
HLA-CQ95604 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC6.29□□□□□ -1.4
HLA-CQ95604 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HLA-CQ95604 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC6.29□□□□□ -1.4
HLA-CQ95604 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.29□□□□□ -1.4
HLA-CQ95604 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HLA-CQ95604 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HLA-CQ95604 AC138393.1-203ENST00000327086 343 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HLA-CQ95604 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
HLA-CQ95604 RNU6-817P-201ENST00000391083 104 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HLA-CQ95604 AL160275.3-201ENST00000423876 471 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 AC073063.1-201ENST00000434352 607 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 DPY19L2P2-203ENST00000435536 1858 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 RPS23P6-201ENST00000466136 431 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 RPL7AP6-201ENST00000477943 801 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 IRF5P1-201ENST00000504852 2164 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 AC022868.1-201ENST00000517767 391 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 AP006587.4-201ENST00000526053 529 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 CR383656.7-201ENST00000548164 174 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 AC126177.3-201ENST00000551839 688 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC6.29□□□□□ -1.4
HLA-CQ95604 MIR5692A1-201ENST00000580523 69 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 AC067852.3-201ENST00000589177 561 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 AC008962.1-201ENST00000605729 304 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 BX284668.6-201ENST00000606899 438 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.29□□□□□ -1.4
HLA-CQ95604 AL161616.1-201ENST00000611867 286 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 AP001282.2-201ENST00000616149 309 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HLA-CQ95604 MIR4275-201ENST00000636486 87 ntBASIC6.29□□□□□ -1.4
HLA-CQ95604 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HLA-CQ95604 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HLA-CQ95604 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.29□□□□□ -1.4
HLA-CQ95604 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC6.29□□□□□ -1.4
HLA-CQ95604 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC6.29□□□□□ -1.4
HLA-CQ95604 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HLA-CQ95604 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC6.29□□□□□ -1.4
HLA-CQ95604 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HLA-CQ95604 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
HLA-CQ95604 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC6.28□□□□□ -1.4
HLA-CQ95604 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HLA-CQ95604 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.28□□□□□ -1.4
HLA-CQ95604 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
HLA-CQ95604 TEK-204ENST00000519097 3836 ntTSL 2 BASIC6.28□□□□□ -1.4
HLA-CQ95604 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
HLA-CQ95604 ALB-209ENST00000503124 1741 ntTSL 5 BASIC6.28□□□□□ -1.4
HLA-CQ95604 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HLA-CQ95604 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HLA-CQ95604 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HLA-CQ95604 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HLA-CQ95604 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC6.28□□□□□ -1.4
HLA-CQ95604 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
HLA-CQ95604 RNU6-545P-201ENST00000362681 104 ntBASIC6.28□□□□□ -1.4
HLA-CQ95604 RNA5SP375-201ENST00000362975 119 ntBASIC6.28□□□□□ -1.4
HLA-CQ95604 RNU6-774P-201ENST00000363238 107 ntBASIC6.28□□□□□ -1.4
HLA-CQ95604 RNA5SP350-201ENST00000363298 111 ntBASIC6.28□□□□□ -1.4
HLA-CQ95604 RNU105B-201ENST00000364478 208 ntBASIC6.28□□□□□ -1.4
HLA-CQ95604 Y_RNA.274-201ENST00000364714 101 ntBASIC6.28□□□□□ -1.4
HLA-CQ95604 RNU6-48P-201ENST00000384161 107 ntBASIC6.28□□□□□ -1.4
HLA-CQ95604 MIR628-201ENST00000385229 95 ntBASIC6.28□□□□□ -1.4
HLA-CQ95604 MIR1204-201ENST00000408388 67 ntBASIC6.28□□□□□ -1.4
HLA-CQ95604 AL030996.1-201ENST00000411430 235 ntBASIC6.28□□□□□ -1.4
HLA-CQ95604 MTCO3P29-201ENST00000432119 779 ntBASIC6.28□□□□□ -1.4
HLA-CQ95604 CEACAMP7-201ENST00000444105 496 ntBASIC6.28□□□□□ -1.4
HLA-CQ95604 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC6.28□□□□□ -1.4
HLA-CQ95604 RNU6-953P-201ENST00000459154 107 ntBASIC6.28□□□□□ -1.4
HLA-CQ95604 AC100832.1-201ENST00000471945 383 ntBASIC6.28□□□□□ -1.4
HLA-CQ95604 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC6.28□□□□□ -1.4
HLA-CQ95604 OR51K1P-201ENST00000510214 950 ntBASIC6.28□□□□□ -1.4
HLA-CQ95604 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC6.28□□□□□ -1.4
HLA-CQ95604 CBX3P8-201ENST00000532412 525 ntBASIC6.28□□□□□ -1.4
HLA-CQ95604 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC6.28□□□□□ -1.4
HLA-CQ95604 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms