Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL356473.1-201ENST00000406203 1408 ntBASIC4□□□□□ -1.77
COL28A1Q2UY09 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4□□□□□ -1.77
COL28A1Q2UY09 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4□□□□□ -1.77
COL28A1Q2UY09 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
COL28A1Q2UY09 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4□□□□□ -1.77
COL28A1Q2UY09 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
COL28A1Q2UY09 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
COL28A1Q2UY09 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4□□□□□ -1.77
COL28A1Q2UY09 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
COL28A1Q2UY09 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 RNU6-374P-201ENST00000364146 108 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 MIR183-201ENST00000384958 110 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 RPL31P1-201ENST00000398116 372 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AL121972.1-201ENST00000402023 252 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AL355379.1-201ENST00000405542 640 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 RNU4-6P-201ENST00000410804 122 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 SNORA57.3-201ENST00000411095 141 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 JKAMPP1-201ENST00000413804 919 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AC083875.1-201ENST00000419509 405 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 FNDC3CP-201ENST00000420795 1155 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 SNRPEP7-201ENST00000438350 220 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AC110792.1-201ENST00000491826 472 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AL139099.1-201ENST00000497398 403 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AC093534.1-201ENST00000504977 132 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 PTGES3P3-201ENST00000511479 482 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 RN7SKP289-201ENST00000517244 295 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AC008802.1-201ENST00000519121 791 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AC090136.1-201ENST00000520009 240 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 DEFB109D-201ENST00000529497 240 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AC087276.1-201ENST00000529659 480 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 RPL23AP97-201ENST00000568955 471 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 FAM27D1-201ENST00000612308 341 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AL445363.3-201ENST00000623080 671 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AC006065.5-201ENST00000623427 349 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AC018555.1-201ENST00000567548 1980 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 MTCO1P12-201ENST00000414273 1543 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 AL445523.1-201ENST00000451184 1362 ntBASIC3.99□□□□□ -1.77
COL28A1Q2UY09 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
COL28A1Q2UY09 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 MTND5P3-201ENST00000438536 1800 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 OR11H4-201ENST00000315409 1082 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 RNVU1-3-201ENST00000364313 161 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 Y_RNA.302-201ENST00000364997 102 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 RNA5SP88-201ENST00000365560 109 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 SNORA5A-201ENST00000384111 134 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 RNA5SP56-201ENST00000410277 118 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 MIR1911-201ENST00000410783 80 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AC009518.2-201ENST00000418056 731 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 RPL7P30-201ENST00000420888 709 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AL157831.1-201ENST00000426134 473 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 EZH2P1-201ENST00000431167 291 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 CKS1BP5-201ENST00000434172 273 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 MUPP-201ENST00000438111 566 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AL512326.1-201ENST00000443050 721 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 MEMO1P3-201ENST00000459811 302 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 RPL35AP15-201ENST00000468042 339 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 RPS29P2-201ENST00000479278 136 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC3.98□□□□□ -1.77
COL28A1Q2UY09 RNU6-150P-201ENST00000516237 95 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 RNU1-95P-201ENST00000516357 160 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 RNU1-128P-201ENST00000516704 160 ntBASIC3.98□□□□□ -1.77
COL28A1Q2UY09 RN7SKP116-201ENST00000516902 319 ntBASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms