Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 AL355143.1-201ENST00000407101 841 ntBASIC3.15□□□□□ -1.91
SHHQ15465 UBE2V1P15-201ENST00000407776 448 ntBASIC3.15□□□□□ -1.91
SHHQ15465 SNORA3.2-201ENST00000408221 125 ntBASIC3.15□□□□□ -1.91
SHHQ15465 RN7SKP285-201ENST00000410137 318 ntBASIC3.15□□□□□ -1.91
SHHQ15465 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.15□□□□□ -1.91
SHHQ15465 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC3.15□□□□□ -1.91
SHHQ15465 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC3.15□□□□□ -1.91
SHHQ15465 CR848007.2-201ENST00000424918 787 ntBASIC3.15□□□□□ -1.91
SHHQ15465 AL590623.1-201ENST00000427864 105 ntBASIC3.15□□□□□ -1.91
SHHQ15465 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC3.15□□□□□ -1.91
SHHQ15465 TRAPPC13P1-201ENST00000435991 1062 ntBASIC3.15□□□□□ -1.91
SHHQ15465 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.15□□□□□ -1.91
SHHQ15465 TVP23BP2-201ENST00000455082 615 ntBASIC3.15□□□□□ -1.91
SHHQ15465 AC010468.1-201ENST00000461022 817 ntBASIC3.15□□□□□ -1.91
SHHQ15465 RPL23AP44-201ENST00000482216 473 ntBASIC3.15□□□□□ -1.91
SHHQ15465 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.15□□□□□ -1.91
SHHQ15465 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC3.15□□□□□ -1.91
SHHQ15465 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.15□□□□□ -1.91
SHHQ15465 RNU6-415P-201ENST00000516252 97 ntBASIC3.15□□□□□ -1.91
SHHQ15465 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC3.15□□□□□ -1.91
SHHQ15465 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC3.15□□□□□ -1.91
SHHQ15465 AC093331.1-201ENST00000521474 169 ntBASIC3.15□□□□□ -1.91
SHHQ15465 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.15□□□□□ -1.91
SHHQ15465 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.15□□□□□ -1.91
SHHQ15465 OR4R2P-201ENST00000530815 597 ntBASIC3.15□□□□□ -1.91
SHHQ15465 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC3.15□□□□□ -1.91
SHHQ15465 AC107016.2-201ENST00000547968 190 ntBASIC3.15□□□□□ -1.91
SHHQ15465 AC074029.1-201ENST00000552531 1044 ntBASIC3.15□□□□□ -1.91
SHHQ15465 POLR2KP1-201ENST00000553226 168 ntBASIC3.15□□□□□ -1.91
SHHQ15465 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.15□□□□□ -1.91
SHHQ15465 AL845331.3-202ENST00000562856 261 ntBASIC3.15□□□□□ -1.91
SHHQ15465 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.15□□□□□ -1.91
SHHQ15465 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.15□□□□□ -1.91
SHHQ15465 AC015871.2-201ENST00000603605 948 ntBASIC3.15□□□□□ -1.91
SHHQ15465 AC007566.2-201ENST00000603642 413 ntBASIC3.15□□□□□ -1.91
SHHQ15465 MIR6817-201ENST00000615588 66 ntBASIC3.15□□□□□ -1.91
SHHQ15465 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.15□□□□□ -1.91
SHHQ15465 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.15□□□□□ -1.91
SHHQ15465 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
SHHQ15465 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
SHHQ15465 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SHHQ15465 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
SHHQ15465 AF127577.6-201ENST00000623352 2191 ntBASIC3.15□□□□□ -1.91
SHHQ15465 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SHHQ15465 SAGE4P-201ENST00000442271 3381 ntBASIC3.15□□□□□ -1.91
SHHQ15465 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SHHQ15465 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SHHQ15465 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.14□□□□□ -1.91
SHHQ15465 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SHHQ15465 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
SHHQ15465 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
SHHQ15465 RNU6-859P-201ENST00000362728 107 ntBASIC3.14□□□□□ -1.91
SHHQ15465 RNA5SP167-201ENST00000365461 116 ntBASIC3.14□□□□□ -1.91
SHHQ15465 RNU6-356P-201ENST00000384140 107 ntBASIC3.14□□□□□ -1.91
SHHQ15465 SNORA70E-201ENST00000384492 135 ntBASIC3.14□□□□□ -1.91
SHHQ15465 MIR153-1-201ENST00000384914 90 ntBASIC3.14□□□□□ -1.91
SHHQ15465 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.14□□□□□ -1.91
SHHQ15465 FAR1P1-201ENST00000427163 934 ntBASIC3.14□□□□□ -1.91
SHHQ15465 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.14□□□□□ -1.91
SHHQ15465 UBE2V1P6-201ENST00000430840 422 ntBASIC3.14□□□□□ -1.91
SHHQ15465 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC3.14□□□□□ -1.91
SHHQ15465 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC3.14□□□□□ -1.91
SHHQ15465 UBE2D3P1-201ENST00000436669 444 ntBASIC3.14□□□□□ -1.91
SHHQ15465 HMGB3P11-201ENST00000440127 604 ntBASIC3.14□□□□□ -1.91
SHHQ15465 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC3.14□□□□□ -1.91
SHHQ15465 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC3.14□□□□□ -1.91
SHHQ15465 RPS3P1-201ENST00000456781 192 ntBASIC3.14□□□□□ -1.91
SHHQ15465 RPL37P6-202ENST00000464216 403 ntBASIC3.14□□□□□ -1.91
SHHQ15465 AC078817.1-201ENST00000492623 435 ntBASIC3.14□□□□□ -1.91
SHHQ15465 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3.14□□□□□ -1.91
SHHQ15465 AC025768.1-201ENST00000510057 267 ntBASIC3.14□□□□□ -1.91
SHHQ15465 AC006445.2-201ENST00000510061 472 ntBASIC3.14□□□□□ -1.91
SHHQ15465 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.14□□□□□ -1.91
SHHQ15465 Y_RNA.673-201ENST00000516306 88 ntBASIC3.14□□□□□ -1.91
SHHQ15465 Y_RNA.676-201ENST00000516393 96 ntBASIC3.14□□□□□ -1.91
SHHQ15465 AC008562.1-201ENST00000521763 330 ntBASIC3.14□□□□□ -1.91
SHHQ15465 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.14□□□□□ -1.91
SHHQ15465 AP001646.1-201ENST00000527936 915 ntBASIC3.14□□□□□ -1.91
SHHQ15465 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.14□□□□□ -1.91
SHHQ15465 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SHHQ15465 AC006270.2-201ENST00000578523 652 ntBASIC3.14□□□□□ -1.91
SHHQ15465 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.14□□□□□ -1.91
SHHQ15465 AC011492.1-201ENST00000600023 315 ntBASIC3.14□□□□□ -1.91
SHHQ15465 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.14□□□□□ -1.91
SHHQ15465 AC007687.1-201ENST00000602704 304 ntBASIC3.14□□□□□ -1.91
SHHQ15465 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SHHQ15465 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SHHQ15465 PLCE1P1-201ENST00000622094 305 ntBASIC3.14□□□□□ -1.91
SHHQ15465 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
SHHQ15465 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.14□□□□□ -1.91
SHHQ15465 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.14□□□□□ -1.91
SHHQ15465 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
SHHQ15465 AC091152.2-201ENST00000591628 2569 ntBASIC3.13□□□□□ -1.91
SHHQ15465 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.13□□□□□ -1.91
SHHQ15465 RPL7P26-201ENST00000333817 754 ntBASIC3.13□□□□□ -1.91
SHHQ15465 RNU1-112P-201ENST00000364401 164 ntBASIC3.13□□□□□ -1.91
SHHQ15465 RAP1BP1-201ENST00000412709 553 ntBASIC3.13□□□□□ -1.91
SHHQ15465 AC004987.3-201ENST00000413879 771 ntBASIC3.13□□□□□ -1.91
SHHQ15465 AC002075.2-201ENST00000425207 252 ntBASIC3.13□□□□□ -1.91
SHHQ15465 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms