Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.59□□□□□ -1.83
PEX3P56589 AC011602.1-201ENST00000546484 331 ntBASIC3.59□□□□□ -1.83
PEX3P56589 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC3.59□□□□□ -1.83
PEX3P56589 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.59□□□□□ -1.83
PEX3P56589 AL161713.1-201ENST00000555538 145 ntBASIC3.59□□□□□ -1.83
PEX3P56589 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PEX3P56589 AGGF1P5-201ENST00000567900 919 ntBASIC3.59□□□□□ -1.83
PEX3P56589 MTND3P13-201ENST00000574391 343 ntBASIC3.59□□□□□ -1.83
PEX3P56589 MIR4458-201ENST00000578872 75 ntBASIC3.59□□□□□ -1.83
PEX3P56589 MIR5708-201ENST00000579723 85 ntBASIC3.59□□□□□ -1.83
PEX3P56589 AC015688.2-201ENST00000584523 262 ntBASIC3.59□□□□□ -1.83
PEX3P56589 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.59□□□□□ -1.83
PEX3P56589 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.59□□□□□ -1.83
PEX3P56589 AL445435.1-201ENST00000604232 665 ntBASIC3.59□□□□□ -1.83
PEX3P56589 AC009974.1-201ENST00000608881 455 ntBASIC3.59□□□□□ -1.83
PEX3P56589 AL157817.1-201ENST00000614264 790 ntBASIC3.59□□□□□ -1.83
PEX3P56589 AC023158.2-201ENST00000614876 543 ntBASIC3.59□□□□□ -1.83
PEX3P56589 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.59□□□□□ -1.83
PEX3P56589 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.59□□□□□ -1.83
PEX3P56589 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
PEX3P56589 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PEX3P56589 DCAF13P3-201ENST00000561147 1334 ntBASIC3.59□□□□□ -1.83
PEX3P56589 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.59□□□□□ -1.83
PEX3P56589 MTND5P31-201ENST00000419366 1374 ntBASIC3.59□□□□□ -1.83
PEX3P56589 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.59□□□□□ -1.84
PEX3P56589 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
PEX3P56589 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
PEX3P56589 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
PEX3P56589 AC058791.1-201ENST00000608412 3198 ntBASIC3.59□□□□□ -1.84
PEX3P56589 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
PEX3P56589 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PEX3P56589 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.58□□□□□ -1.84
PEX3P56589 HMGB1P5-201ENST00000255320 642 ntBASIC3.58□□□□□ -1.84
PEX3P56589 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PEX3P56589 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
PEX3P56589 RNU6-444P-201ENST00000383988 108 ntBASIC3.58□□□□□ -1.84
PEX3P56589 SNORD116-12-201ENST00000384468 92 ntBASIC3.58□□□□□ -1.84
PEX3P56589 RNU6-906P-201ENST00000384700 70 ntBASIC3.58□□□□□ -1.84
PEX3P56589 SNORD65.1-201ENST00000390889 71 ntBASIC3.58□□□□□ -1.84
PEX3P56589 U3.19-201ENST00000390893 196 ntBASIC3.58□□□□□ -1.84
PEX3P56589 DSTNP4-201ENST00000399472 474 ntBASIC3.58□□□□□ -1.84
PEX3P56589 AL136310.1-201ENST00000404926 654 ntBASIC3.58□□□□□ -1.84
PEX3P56589 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
PEX3P56589 LUZP4P1-201ENST00000415420 344 ntBASIC3.58□□□□□ -1.84
PEX3P56589 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.58□□□□□ -1.84
PEX3P56589 OR4K6P-201ENST00000416478 897 ntBASIC3.58□□□□□ -1.84
PEX3P56589 MTCO1P3-201ENST00000429327 192 ntBASIC3.58□□□□□ -1.84
PEX3P56589 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.58□□□□□ -1.84
PEX3P56589 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC3.58□□□□□ -1.84
PEX3P56589 HMGB3P11-201ENST00000440127 604 ntBASIC3.58□□□□□ -1.84
PEX3P56589 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.58□□□□□ -1.84
PEX3P56589 AC069528.1-202ENST00000482888 637 ntBASIC3.58□□□□□ -1.84
PEX3P56589 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC3.58□□□□□ -1.84
PEX3P56589 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.58□□□□□ -1.84
PEX3P56589 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.58□□□□□ -1.84
PEX3P56589 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.58□□□□□ -1.84
PEX3P56589 RPL7L1P13-201ENST00000511702 739 ntBASIC3.58□□□□□ -1.84
PEX3P56589 FABP5P12-201ENST00000515543 389 ntBASIC3.58□□□□□ -1.84
PEX3P56589 RN7SKP82-201ENST00000516786 223 ntBASIC3.58□□□□□ -1.84
PEX3P56589 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.58□□□□□ -1.84
PEX3P56589 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.58□□□□□ -1.84
PEX3P56589 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PEX3P56589 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.58□□□□□ -1.84
PEX3P56589 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.58□□□□□ -1.84
PEX3P56589 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC3.58□□□□□ -1.84
PEX3P56589 MIR5680-201ENST00000577577 84 ntBASIC3.58□□□□□ -1.84
PEX3P56589 AC022146.1-201ENST00000595307 847 ntBASIC3.58□□□□□ -1.84
PEX3P56589 MTND3P19-201ENST00000603825 345 ntBASIC3.58□□□□□ -1.84
PEX3P56589 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.58□□□□□ -1.84
PEX3P56589 U6.98-201ENST00000637157 84 ntBASIC3.58□□□□□ -1.84
PEX3P56589 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.58□□□□□ -1.84
PEX3P56589 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PEX3P56589 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PEX3P56589 AC007496.3-201ENST00000624987 3443 ntBASIC3.58□□□□□ -1.84
PEX3P56589 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.58□□□□□ -1.84
PEX3P56589 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
PEX3P56589 AC011978.2-201ENST00000569835 2054 ntBASIC3.58□□□□□ -1.84
PEX3P56589 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.58□□□□□ -1.84
PEX3P56589 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PEX3P56589 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
PEX3P56589 U3.15-201ENST00000365398 212 ntBASIC3.57□□□□□ -1.84
PEX3P56589 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.57□□□□□ -1.84
PEX3P56589 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
PEX3P56589 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.57□□□□□ -1.84
PEX3P56589 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
PEX3P56589 DBF4P1-201ENST00000412976 1892 ntBASIC3.57□□□□□ -1.84
PEX3P56589 FCF1P2-201ENST00000415284 583 ntBASIC3.57□□□□□ -1.84
PEX3P56589 NUP35P2-201ENST00000416748 943 ntBASIC3.57□□□□□ -1.84
PEX3P56589 AL513175.2-201ENST00000422071 443 ntBASIC3.57□□□□□ -1.84
PEX3P56589 USP9YP24-201ENST00000434374 697 ntBASIC3.57□□□□□ -1.84
PEX3P56589 BX679664.1-201ENST00000434429 253 ntBASIC3.57□□□□□ -1.84
PEX3P56589 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.57□□□□□ -1.84
PEX3P56589 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.57□□□□□ -1.84
PEX3P56589 USP9YP17-201ENST00000444617 696 ntBASIC3.57□□□□□ -1.84
PEX3P56589 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.57□□□□□ -1.84
PEX3P56589 AC010401.1-201ENST00000463867 348 ntBASIC3.57□□□□□ -1.84
PEX3P56589 RPL37P6-202ENST00000464216 403 ntBASIC3.57□□□□□ -1.84
PEX3P56589 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.57□□□□□ -1.84
PEX3P56589 RN7SL807P-201ENST00000470923 297 ntBASIC3.57□□□□□ -1.84
PEX3P56589 DYNLL1P6-201ENST00000503440 264 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms