Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL031779.1-201ENST00000415663 330 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 HIGD1AP15-201ENST00000416198 280 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.08□□□□□ -1.92
COL4A4P53420 UBE2D3P3-201ENST00000426992 425 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A4P53420 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3.08□□□□□ -1.92
COL4A4P53420 ZNF886P-201ENST00000450781 723 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 HGF-207ENST00000453018 721 ntTSL 3 BASIC3.08□□□□□ -1.92
COL4A4P53420 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.08□□□□□ -1.92
COL4A4P53420 snoU13.23-201ENST00000458863 104 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC3.08□□□□□ -1.92
COL4A4P53420 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.08□□□□□ -1.92
COL4A4P53420 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC3.08□□□□□ -1.92
COL4A4P53420 AC008413.1-201ENST00000511864 177 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 RNU6-760P-201ENST00000516078 97 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 RNA5SP24-201ENST00000516478 95 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.08□□□□□ -1.92
COL4A4P53420 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL4A4P53420 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
COL4A4P53420 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC3.08□□□□□ -1.92
COL4A4P53420 AC023824.3-201ENST00000569003 562 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC3.08□□□□□ -1.92
COL4A4P53420 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.08□□□□□ -1.92
COL4A4P53420 Z99497.2-201ENST00000603634 310 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 AC011330.2-201ENST00000621680 635 ntBASIC3.08□□□□□ -1.92
COL4A4P53420 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
COL4A4P53420 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL4A4P53420 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL4A4P53420 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL4A4P53420 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL4A4P53420 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL4A4P53420 MTND5P12-201ENST00000502851 1449 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 AP006437.1-201ENST00000641440 3685 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.07□□□□□ -1.92
COL4A4P53420 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.07□□□□□ -1.92
COL4A4P53420 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL4A4P53420 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC3.07□□□□□ -1.92
COL4A4P53420 RNU6-891P-201ENST00000384280 111 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 SNORD116-8-201ENST00000384365 95 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 MIR764-201ENST00000390811 85 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 RNA5SP21-201ENST00000410917 96 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.07□□□□□ -1.92
COL4A4P53420 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.07□□□□□ -1.92
COL4A4P53420 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC3.07□□□□□ -1.92
COL4A4P53420 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC3.07□□□□□ -1.92
COL4A4P53420 RPP40P1-201ENST00000426762 456 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 MTCO1P51-201ENST00000427672 1060 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL4A4P53420 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC3.07□□□□□ -1.92
COL4A4P53420 AL589765.3-201ENST00000446084 462 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 Z73417.1-201ENST00000447373 778 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.07□□□□□ -1.92
COL4A4P53420 SNORD11.1-201ENST00000459482 85 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 AC133134.1-201ENST00000466800 359 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC3.07□□□□□ -1.92
COL4A4P53420 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.07□□□□□ -1.92
COL4A4P53420 AC020699.1-201ENST00000505161 445 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL4A4P53420 AC010486.3-201ENST00000511602 785 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 Y_RNA.655-201ENST00000515919 96 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 RNU5A-4P-201ENST00000516588 111 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 NPM1P35-201ENST00000533043 868 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC3.07□□□□□ -1.92
COL4A4P53420 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC3.07□□□□□ -1.92
COL4A4P53420 NDUFAF4P1-201ENST00000559425 519 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 AC145350.1-201ENST00000567426 208 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.07□□□□□ -1.92
COL4A4P53420 PIGPP4-201ENST00000584447 307 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 PCNAP1-202ENST00000595299 752 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 AC092954.1-201ENST00000609121 445 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 AC124016.2-201ENST00000610058 665 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 AL512643.1-201ENST00000635735 524 ntBASIC3.07□□□□□ -1.92
COL4A4P53420 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.07□□□□□ -1.92
COL4A4P53420 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL4A4P53420 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL4A4P53420 RNU4-28P-201ENST00000364739 141 ntBASIC3.06□□□□□ -1.92
COL4A4P53420 RNU6-851P-201ENST00000384565 107 ntBASIC3.06□□□□□ -1.92
COL4A4P53420 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL4A4P53420 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.06□□□□□ -1.92
COL4A4P53420 MTCO3P4-201ENST00000419236 787 ntBASIC3.06□□□□□ -1.92
COL4A4P53420 NDUFA5P10-201ENST00000432147 357 ntBASIC3.06□□□□□ -1.92
COL4A4P53420 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC3.06□□□□□ -1.92
COL4A4P53420 MTND4P6-201ENST00000438297 472 ntBASIC3.06□□□□□ -1.92
COL4A4P53420 MTCYBP12-201ENST00000440559 1134 ntBASIC3.06□□□□□ -1.92
COL4A4P53420 AL591719.1-201ENST00000444669 744 ntBASIC3.06□□□□□ -1.92
COL4A4P53420 MTND1P1-201ENST00000445453 368 ntBASIC3.06□□□□□ -1.92
COL4A4P53420 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.06□□□□□ -1.92
COL4A4P53420 AP000936.2-201ENST00000447151 681 ntBASIC3.06□□□□□ -1.92
COL4A4P53420 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC3.06□□□□□ -1.92
COL4A4P53420 MTND1P27-201ENST00000451117 902 ntBASIC3.06□□□□□ -1.92
COL4A4P53420 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.06□□□□□ -1.92
COL4A4P53420 snoU13.15-201ENST00000459407 104 ntBASIC3.06□□□□□ -1.92
COL4A4P53420 BET1P1-201ENST00000482276 359 ntBASIC3.06□□□□□ -1.92
COL4A4P53420 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC3.06□□□□□ -1.92
COL4A4P53420 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.06□□□□□ -1.92
COL4A4P53420 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
COL4A4P53420 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC3.06□□□□□ -1.92
COL4A4P53420 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.06□□□□□ -1.92
COL4A4P53420 AC122134.1-201ENST00000565664 1104 ntBASIC3.06□□□□□ -1.92
COL4A4P53420 MTATP6P2-201ENST00000603319 678 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms