Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC099063.3-201ENST00000642066 185 ntBASIC3.74□□□□□ -1.81
MSH6P52701 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
MSH6P52701 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.74□□□□□ -1.81
MSH6P52701 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
MSH6P52701 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.74□□□□□ -1.81
MSH6P52701 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
MSH6P52701 AC108206.1-201ENST00000570186 4159 ntBASIC3.74□□□□□ -1.81
MSH6P52701 AC090229.1-201ENST00000590983 1609 ntBASIC3.73□□□□□ -1.81
MSH6P52701 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.73□□□□□ -1.81
MSH6P52701 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
MSH6P52701 MIR92A2-201ENST00000385299 75 ntBASIC3.73□□□□□ -1.81
MSH6P52701 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.73□□□□□ -1.81
MSH6P52701 XKRY2-201ENST00000442362 1093 ntBASIC3.73□□□□□ -1.81
MSH6P52701 FAM103A2P-201ENST00000444122 354 ntBASIC3.73□□□□□ -1.81
MSH6P52701 AL353705.4-201ENST00000449661 238 ntBASIC3.73□□□□□ -1.81
MSH6P52701 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC3.73□□□□□ -1.81
MSH6P52701 MTND2P3-201ENST00000452458 470 ntBASIC3.73□□□□□ -1.81
MSH6P52701 HMGB3P21-201ENST00000452483 547 ntBASIC3.73□□□□□ -1.81
MSH6P52701 AC090525.1-201ENST00000479116 478 ntBASIC3.73□□□□□ -1.81
MSH6P52701 AC126121.1-201ENST00000482313 553 ntBASIC3.73□□□□□ -1.81
MSH6P52701 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC3.73□□□□□ -1.81
MSH6P52701 AC009063.1-201ENST00000563342 702 ntBASIC3.73□□□□□ -1.81
MSH6P52701 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC3.73□□□□□ -1.81
MSH6P52701 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.73□□□□□ -1.81
MSH6P52701 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
MSH6P52701 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
MSH6P52701 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
MSH6P52701 ZNF542P-204ENST00000482727 1305 ntBASIC3.72□□□□□ -1.81
MSH6P52701 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
MSH6P52701 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
MSH6P52701 RNA5SP99-201ENST00000364020 114 ntBASIC3.72□□□□□ -1.81
MSH6P52701 RNU6-185P-201ENST00000384421 107 ntBASIC3.72□□□□□ -1.81
MSH6P52701 SNORA70E-201ENST00000384492 135 ntBASIC3.72□□□□□ -1.81
MSH6P52701 RPL21P3-201ENST00000395517 478 ntBASIC3.72□□□□□ -1.81
MSH6P52701 CCNB2P1-201ENST00000399411 1150 ntBASIC3.72□□□□□ -1.81
MSH6P52701 AC013404.1-201ENST00000413068 249 ntBASIC3.72□□□□□ -1.81
MSH6P52701 CR848007.2-201ENST00000424918 787 ntBASIC3.72□□□□□ -1.81
MSH6P52701 MTND5P8-201ENST00000449817 1083 ntBASIC3.72□□□□□ -1.81
MSH6P52701 HMGB1P26-201ENST00000452520 628 ntBASIC3.72□□□□□ -1.81
MSH6P52701 OR6K1P-201ENST00000456766 971 ntBASIC3.72□□□□□ -1.81
MSH6P52701 AC146507.2-201ENST00000460608 476 ntBASIC3.72□□□□□ -1.81
MSH6P52701 RPS27AP9-201ENST00000477681 438 ntBASIC3.72□□□□□ -1.81
MSH6P52701 AL049830.2-201ENST00000480072 201 ntBASIC3.72□□□□□ -1.81
MSH6P52701 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC3.72□□□□□ -1.81
MSH6P52701 KCTD9P5-201ENST00000504141 1170 ntBASIC3.72□□□□□ -1.81
MSH6P52701 MTCO1P31-201ENST00000506355 492 ntBASIC3.72□□□□□ -1.81
MSH6P52701 AC118282.1-201ENST00000506408 765 ntBASIC3.72□□□□□ -1.81
MSH6P52701 AC119751.1-201ENST00000513357 765 ntBASIC3.72□□□□□ -1.81
MSH6P52701 RNA5SP320-201ENST00000516263 124 ntBASIC3.72□□□□□ -1.81
MSH6P52701 AC026616.1-201ENST00000523157 525 ntBASIC3.72□□□□□ -1.81
MSH6P52701 MIR4716-201ENST00000579628 84 ntBASIC3.72□□□□□ -1.81
MSH6P52701 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.72□□□□□ -1.81
MSH6P52701 AC055764.2-201ENST00000610089 670 ntBASIC3.72□□□□□ -1.81
MSH6P52701 AC139769.3-201ENST00000618383 175 ntBASIC3.72□□□□□ -1.81
MSH6P52701 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
MSH6P52701 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
MSH6P52701 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.71□□□□□ -1.82
MSH6P52701 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
MSH6P52701 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
MSH6P52701 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
MSH6P52701 RNU4-26P-201ENST00000410270 107 ntBASIC3.71□□□□□ -1.82
MSH6P52701 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.71□□□□□ -1.82
MSH6P52701 ISCA1P6-201ENST00000427740 390 ntBASIC3.71□□□□□ -1.82
MSH6P52701 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
MSH6P52701 MTND2P21-201ENST00000436242 1042 ntBASIC3.71□□□□□ -1.82
MSH6P52701 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC3.71□□□□□ -1.82
MSH6P52701 RPL34P26-201ENST00000445636 354 ntBASIC3.71□□□□□ -1.82
MSH6P52701 RPL7P12-201ENST00000446719 750 ntBASIC3.71□□□□□ -1.82
MSH6P52701 AC078817.1-201ENST00000492623 435 ntBASIC3.71□□□□□ -1.82
MSH6P52701 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC3.71□□□□□ -1.82
MSH6P52701 RN7SKP43-201ENST00000516173 320 ntBASIC3.71□□□□□ -1.82
MSH6P52701 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.71□□□□□ -1.82
MSH6P52701 HPRT1P3-201ENST00000539521 576 ntBASIC3.71□□□□□ -1.82
MSH6P52701 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC3.71□□□□□ -1.82
MSH6P52701 AL391156.1-201ENST00000554965 554 ntBASIC3.71□□□□□ -1.82
MSH6P52701 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC3.71□□□□□ -1.82
MSH6P52701 ZNF861P-201ENST00000588126 639 ntBASIC3.71□□□□□ -1.82
MSH6P52701 AC007938.3-201ENST00000604965 623 ntBASIC3.71□□□□□ -1.82
MSH6P52701 AL355802.4-201ENST00000607635 548 ntBASIC3.71□□□□□ -1.82
MSH6P52701 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.71□□□□□ -1.82
MSH6P52701 MTCO1P14-201ENST00000441695 1559 ntBASIC3.71□□□□□ -1.82
MSH6P52701 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
MSH6P52701 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.71□□□□□ -1.82
MSH6P52701 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
MSH6P52701 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
MSH6P52701 SNORD62.1-201ENST00000362541 86 ntBASIC3.7□□□□□ -1.82
MSH6P52701 RNU4-31P-201ENST00000384211 141 ntBASIC3.7□□□□□ -1.82
MSH6P52701 AL138785.1-201ENST00000425821 331 ntBASIC3.7□□□□□ -1.82
MSH6P52701 AL356320.1-201ENST00000429616 163 ntBASIC3.7□□□□□ -1.82
MSH6P52701 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC3.7□□□□□ -1.82
MSH6P52701 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.7□□□□□ -1.82
MSH6P52701 RPL21P41-201ENST00000459863 264 ntBASIC3.7□□□□□ -1.82
MSH6P52701 AC107398.1-201ENST00000486904 505 ntBASIC3.7□□□□□ -1.82
MSH6P52701 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.7□□□□□ -1.82
MSH6P52701 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC3.7□□□□□ -1.82
MSH6P52701 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.7□□□□□ -1.82
MSH6P52701 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC3.7□□□□□ -1.82
MSH6P52701 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC3.7□□□□□ -1.82
MSH6P52701 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC3.7□□□□□ -1.82
MSH6P52701 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms