Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC073114.1-201ENST00000612027 490 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 AL158063.1-201ENST00000615349 536 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 AL356596.1-201ENST00000624230 379 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PTPN9P43378 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.13□□□□□ -1.75
PTPN9P43378 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
PTPN9P43378 AC097714.1-201ENST00000511272 1647 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 AC026951.1-201ENST00000559530 2459 ntBASIC4.13□□□□□ -1.75
PTPN9P43378 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
PTPN9P43378 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.12□□□□□ -1.75
PTPN9P43378 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.12□□□□□ -1.75
PTPN9P43378 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
PTPN9P43378 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.12□□□□□ -1.75
PTPN9P43378 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
PTPN9P43378 ZNF734P-201ENST00000419494 1534 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 ATP8A2P3-201ENST00000426792 1536 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 CR383658.2-201ENST00000547576 1525 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
PTPN9P43378 RNU6-660P-201ENST00000364566 109 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 DHFRP6-201ENST00000401776 268 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.12□□□□□ -1.75
PTPN9P43378 RPL7P8-201ENST00000411964 730 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC4.12□□□□□ -1.75
PTPN9P43378 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 MTCO3P5-201ENST00000433620 714 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 ATP5HP2-201ENST00000433885 485 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 MUPP-201ENST00000438111 566 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 AL512286.1-201ENST00000439244 400 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.12□□□□□ -1.75
PTPN9P43378 MTCO1P27-201ENST00000448269 226 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 AL645939.1-201ENST00000453429 797 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 SUMO2P2-201ENST00000456482 255 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 RPL21P103-201ENST00000479921 488 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 FAM172BP-201ENST00000487497 1089 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 AL024509.2-201ENST00000493462 493 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 AC106872.2-201ENST00000494303 480 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 OR2A20P-203ENST00000498397 1268 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.12□□□□□ -1.75
PTPN9P43378 OR5H5P-201ENST00000503164 928 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 AC020593.1-201ENST00000507399 299 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 AC109458.1-201ENST00000508858 316 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC4.12□□□□□ -1.75
PTPN9P43378 MTND5P13-201ENST00000513046 1079 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 AC108064.1-201ENST00000513791 460 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 RNA5SP179-201ENST00000517284 121 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 IGHV3-32-201ENST00000519182 355 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC4.12□□□□□ -1.75
PTPN9P43378 COX6CP8-201ENST00000522620 226 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC4.12□□□□□ -1.75
PTPN9P43378 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC4.12□□□□□ -1.75
PTPN9P43378 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.12□□□□□ -1.75
PTPN9P43378 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC4.12□□□□□ -1.75
PTPN9P43378 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.12□□□□□ -1.75
PTPN9P43378 OR4G1P-201ENST00000588632 938 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 AC091167.4-201ENST00000605079 184 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.12□□□□□ -1.75
PTPN9P43378 uc_338.32-201ENST00000615087 172 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 AL139089.1-201ENST00000620372 975 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 AL445264.1-201ENST00000621719 171 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 MIR4727-201ENST00000622232 55 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.12□□□□□ -1.75
PTPN9P43378 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
PTPN9P43378 UBE3AP2-201ENST00000429033 2259 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 AC018555.1-201ENST00000567548 1980 ntBASIC4.12□□□□□ -1.75
PTPN9P43378 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTPN9P43378 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTPN9P43378 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.12□□□□□ -1.75
PTPN9P43378 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.12□□□□□ -1.75
PTPN9P43378 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.11□□□□□ -1.75
PTPN9P43378 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.11□□□□□ -1.75
PTPN9P43378 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.11□□□□□ -1.75
PTPN9P43378 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
PTPN9P43378 RNU4-21P-201ENST00000362802 126 ntBASIC4.11□□□□□ -1.75
PTPN9P43378 RNU6-501P-201ENST00000364072 100 ntBASIC4.11□□□□□ -1.75
PTPN9P43378 RNU4-24P-201ENST00000364565 139 ntBASIC4.11□□□□□ -1.75
PTPN9P43378 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.11□□□□□ -1.75
PTPN9P43378 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
PTPN9P43378 RNU6-878P-201ENST00000384578 110 ntBASIC4.11□□□□□ -1.75
PTPN9P43378 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
PTPN9P43378 SLC9B1P2-201ENST00000398120 1184 ntBASIC4.11□□□□□ -1.75
PTPN9P43378 MIR1250-201ENST00000408098 113 ntBASIC4.11□□□□□ -1.75
PTPN9P43378 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.11□□□□□ -1.75
PTPN9P43378 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.11□□□□□ -1.75
PTPN9P43378 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.11□□□□□ -1.75
PTPN9P43378 MTCO2P5-201ENST00000422621 426 ntBASIC4.11□□□□□ -1.75
PTPN9P43378 RPS27AP12-201ENST00000429552 465 ntBASIC4.11□□□□□ -1.75
PTPN9P43378 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC4.11□□□□□ -1.75
PTPN9P43378 AC087650.1-201ENST00000431445 468 ntBASIC4.11□□□□□ -1.75
PTPN9P43378 OR4C10P-201ENST00000434991 931 ntBASIC4.11□□□□□ -1.75
PTPN9P43378 COX6CP2-201ENST00000444980 225 ntBASIC4.11□□□□□ -1.75
PTPN9P43378 HSFY6P-201ENST00000445573 403 ntBASIC4.11□□□□□ -1.75
PTPN9P43378 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.11□□□□□ -1.75
PTPN9P43378 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC4.11□□□□□ -1.75
PTPN9P43378 RPL31P50-201ENST00000471002 296 ntBASIC4.11□□□□□ -1.75
PTPN9P43378 AC022034.3-201ENST00000471393 478 ntBASIC4.11□□□□□ -1.75
PTPN9P43378 AC116337.2-201ENST00000477662 156 ntBASIC4.11□□□□□ -1.75
PTPN9P43378 AC110792.1-201ENST00000491826 472 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms