Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 RNU6-851P-201ENST00000384565 107 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 VTA1P1-201ENST00000414044 866 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 EEF1A1P41-201ENST00000414667 207 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 HMGB3P23-201ENST00000414981 585 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXA9P31269 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA9P31269 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA9P31269 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA9P31269 HMGN1P18-201ENST00000457642 277 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC3.21□□□□□ -1.9
HOXA9P31269 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC3.21□□□□□ -1.9
HOXA9P31269 OR5H3P-201ENST00000502817 919 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 MTCO2P9-201ENST00000503214 694 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA9P31269 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA9P31269 FABP5P12-201ENST00000515543 389 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 RNU6-334P-201ENST00000517072 102 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.21□□□□□ -1.9
HOXA9P31269 C1DP5-201ENST00000525775 383 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXA9P31269 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA9P31269 AC005951.1-201ENST00000576706 485 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.21□□□□□ -1.9
HOXA9P31269 ELOCP29-201ENST00000588193 334 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC3.21□□□□□ -1.9
HOXA9P31269 VN1R9P-201ENST00000614184 867 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 RMST_10.1-201ENST00000616309 154 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 U6.48-201ENST00000618523 106 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 AP002371.2-201ENST00000624450 503 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 AC004925.1-201ENST00000624256 2706 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 AC004972.1-201ENST00000623934 2209 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA9P31269 MAPK10-362ENST00000641864 4484 ntBASIC3.21□□□□□ -1.9
HOXA9P31269 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA9P31269 AC093010.3-201ENST00000570269 15214 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.2□□□□□ -1.9
HOXA9P31269 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA9P31269 OR5J1P-201ENST00000313544 939 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA9P31269 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA9P31269 ARF4P3-201ENST00000397387 509 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 AL354719.1-201ENST00000406535 843 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 RNA5SP107-201ENST00000411358 122 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXA9P31269 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXA9P31269 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXA9P31269 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXA9P31269 RPL7P29-201ENST00000437151 728 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXA9P31269 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXA9P31269 TPTE2P6-202ENST00000445572 1007 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 MOB1AP2-201ENST00000446060 614 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 AC125238.1-201ENST00000448842 249 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA9P31269 RPL32P14-201ENST00000463196 378 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 RPL7P5-201ENST00000471472 736 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 AC092902.1-201ENST00000486999 259 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 HMGB1P38-201ENST00000490557 577 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 VN1R104P-201ENST00000505115 1009 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC3.2□□□□□ -1.9
HOXA9P31269 AC026801.2-201ENST00000515352 425 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 RNA5SP356-201ENST00000515972 94 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 RNU6-1073P-201ENST00000517182 106 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 AC107016.2-201ENST00000547968 190 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 AC027807.1-201ENST00000559921 996 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 MIR3162-201ENST00000581818 82 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 AL133393.1-201ENST00000603277 287 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 AC005014.3-201ENST00000605985 190 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXA9P31269 AC091903.1-201ENST00000624322 454 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA9P31269 U6.107-201ENST00000637108 79 ntBASIC3.2□□□□□ -1.9
HOXA9P31269 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA9P31269 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.2□□□□□ -1.9
HOXA9P31269 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA9P31269 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
HOXA9P31269 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
HOXA9P31269 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
HOXA9P31269 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXA9P31269 AC096644.4-201ENST00000563417 2912 ntBASIC3.19□□□□□ -1.9
HOXA9P31269 ANKRD36P1-201ENST00000344424 659 ntBASIC3.19□□□□□ -1.9
HOXA9P31269 SNORD56.4-201ENST00000363883 71 ntBASIC3.19□□□□□ -1.9
HOXA9P31269 SNORD67-201ENST00000390833 111 ntBASIC3.19□□□□□ -1.9
HOXA9P31269 SAR1AP2-201ENST00000392696 594 ntBASIC3.19□□□□□ -1.9
HOXA9P31269 AL031121.1-201ENST00000406553 254 ntBASIC3.19□□□□□ -1.9
HOXA9P31269 BX664727.1-201ENST00000416024 466 ntBASIC3.19□□□□□ -1.9
HOXA9P31269 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.19□□□□□ -1.9
HOXA9P31269 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXA9P31269 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXA9P31269 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXA9P31269 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA9P31269 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXA9P31269 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXA9P31269 AC104308.1-201ENST00000454621 333 ntBASIC3.19□□□□□ -1.9
HOXA9P31269 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXA9P31269 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXA9P31269 AC091179.1-201ENST00000461606 579 ntBASIC3.19□□□□□ -1.9
HOXA9P31269 AC117440.1-201ENST00000474107 571 ntBASIC3.19□□□□□ -1.9
HOXA9P31269 RPS29P26-201ENST00000477483 171 ntBASIC3.19□□□□□ -1.9
HOXA9P31269 RPL21P47-201ENST00000483696 477 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms