Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD3P31249 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC3.67□□□□□ -1.82
HOXD3P31249 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXD3P31249 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD3P31249 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD3P31249 AL731532.2-201ENST00000623542 1953 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD3P31249 AC108751.5-201ENST00000492880 1336 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 ACTR3BP2-202ENST00000623630 1338 ntBASIC3.67□□□□□ -1.82
HOXD3P31249 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXD3P31249 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXD3P31249 AC097714.1-201ENST00000511272 1647 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD3P31249 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXD3P31249 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD3P31249 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
HOXD3P31249 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD3P31249 Y_RNA.9-201ENST00000362354 101 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
HOXD3P31249 RNU1-82P-201ENST00000390851 165 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AL049697.2-201ENST00000403708 294 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AL359704.1-201ENST00000411586 781 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AC127391.1-201ENST00000411737 98 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 CTSL3P-202ENST00000412179 788 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 RPL17P36-201ENST00000420302 549 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD3P31249 AC019097.1-201ENST00000424783 735 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AL353777.1-201ENST00000425552 326 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 ELOCP14-201ENST00000428070 331 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 NANOGP6-201ENST00000429190 847 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 MTCO2P11-201ENST00000431069 680 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD3P31249 ELOCP7-201ENST00000439968 331 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD3P31249 VN1R34P-201ENST00000447387 883 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD3P31249 RPL7P52-201ENST00000449200 742 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 RPL37P6-202ENST00000464216 403 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 APOA2-207ENST00000470459 416 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD3P31249 HMGB1P21-201ENST00000502313 581 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AC083829.1-201ENST00000503756 657 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD3P31249 PRDX4P1-201ENST00000507189 574 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 MTCO3P44-201ENST00000510977 541 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 RNA5SP249-201ENST00000516127 99 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 RN7SKP277-201ENST00000516895 283 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AP001893.2-201ENST00000526949 202 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD3P31249 OR5AQ1P-201ENST00000527596 927 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AC022882.1-201ENST00000532142 501 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.66□□□□□ -1.82
HOXD3P31249 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD3P31249 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD3P31249 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXD3P31249 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD3P31249 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD3P31249 AC093249.4-201ENST00000564755 259 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXD3P31249 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD3P31249 AC010680.3-201ENST00000604215 520 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 MIR98-201ENST00000606724 119 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AL133173.2-201ENST00000614270 90 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AC012150.2-201ENST00000621300 544 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 AC079597.1-201ENST00000624306 508 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD3P31249 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD3P31249 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD3P31249 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD3P31249 MTND5P33-201ENST00000571250 1450 ntBASIC3.66□□□□□ -1.82
HOXD3P31249 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.65□□□□□ -1.82
HOXD3P31249 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXD3P31249 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXD3P31249 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD3P31249 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD3P31249 Y_RNA.1-201ENST00000352915 104 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 RNU6-181P-201ENST00000363225 107 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 Y_RNA.234-201ENST00000364409 97 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 RNA5SP479-201ENST00000364858 117 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
HOXD3P31249 CIR1P3-201ENST00000405137 479 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 MIR1277-201ENST00000408536 78 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD3P31249 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD3P31249 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD3P31249 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD3P31249 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD3P31249 AC092832.1-201ENST00000422934 400 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 RGS17P1-201ENST00000423358 553 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD3P31249 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD3P31249 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD3P31249 HMGB1P31-201ENST00000437242 427 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD3P31249 AC132479.1-201ENST00000449160 144 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 BX276092.4-201ENST00000452056 248 ntBASIC3.65□□□□□ -1.83
HOXD3P31249 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD3P31249 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD3P31249 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD3P31249 RPL31P58-201ENST00000469001 379 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms