Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RPL31P1-201ENST00000398116 372 ntBASIC3.42□□□□□ -1.86
SDC3O75056 MTND4LP20-201ENST00000402379 270 ntBASIC3.42□□□□□ -1.86
SDC3O75056 RN7SKP53-201ENST00000411337 315 ntBASIC3.42□□□□□ -1.86
SDC3O75056 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.42□□□□□ -1.86
SDC3O75056 AC005345.1-201ENST00000431868 217 ntBASIC3.42□□□□□ -1.86
SDC3O75056 GTF2IP3-201ENST00000433887 494 ntBASIC3.42□□□□□ -1.86
SDC3O75056 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.42□□□□□ -1.86
SDC3O75056 HMGB1P12-201ENST00000438594 598 ntBASIC3.42□□□□□ -1.86
SDC3O75056 AL358794.1-201ENST00000445689 381 ntBASIC3.42□□□□□ -1.86
SDC3O75056 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.42□□□□□ -1.86
SDC3O75056 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.42□□□□□ -1.86
SDC3O75056 TRBV26-201ENST00000456572 344 ntBASIC3.42□□□□□ -1.86
SDC3O75056 CFTRP1-201ENST00000456646 183 ntBASIC3.42□□□□□ -1.86
SDC3O75056 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.42□□□□□ -1.86
SDC3O75056 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC3.42□□□□□ -1.86
SDC3O75056 RN7SL807P-201ENST00000470923 297 ntBASIC3.42□□□□□ -1.86
SDC3O75056 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
SDC3O75056 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SDC3O75056 BOLA3P3-201ENST00000505182 232 ntBASIC3.42□□□□□ -1.86
SDC3O75056 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SDC3O75056 RN7SKP209-201ENST00000516888 304 ntBASIC3.42□□□□□ -1.86
SDC3O75056 IGKV2-26-201ENST00000518305 343 ntBASIC3.42□□□□□ -1.86
SDC3O75056 AP001207.2-201ENST00000519490 539 ntBASIC3.42□□□□□ -1.86
SDC3O75056 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.42□□□□□ -1.86
SDC3O75056 ZNF705CP-201ENST00000530515 889 ntBASIC3.42□□□□□ -1.86
SDC3O75056 LRRC6P1-201ENST00000532188 885 ntBASIC3.42□□□□□ -1.86
SDC3O75056 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.42□□□□□ -1.86
SDC3O75056 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.42□□□□□ -1.86
SDC3O75056 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC3.42□□□□□ -1.86
SDC3O75056 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.42□□□□□ -1.86
SDC3O75056 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.42□□□□□ -1.86
SDC3O75056 AC103881.1-201ENST00000603476 538 ntBASIC3.42□□□□□ -1.86
SDC3O75056 AC011468.4-201ENST00000603942 409 ntBASIC3.42□□□□□ -1.86
SDC3O75056 RNVU1-4-201ENST00000612985 164 ntBASIC3.42□□□□□ -1.86
SDC3O75056 AC008121.2-201ENST00000614647 523 ntBASIC3.42□□□□□ -1.86
SDC3O75056 MIR7112-201ENST00000616126 65 ntBASIC3.42□□□□□ -1.86
SDC3O75056 AC092628.2-201ENST00000622492 339 ntBASIC3.42□□□□□ -1.86
SDC3O75056 U6.98-201ENST00000637157 84 ntBASIC3.42□□□□□ -1.86
SDC3O75056 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.42□□□□□ -1.86
SDC3O75056 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SDC3O75056 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
SDC3O75056 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SDC3O75056 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.42□□□□□ -1.86
SDC3O75056 AC130650.2-201ENST00000618736 2403 ntBASIC3.42□□□□□ -1.86
SDC3O75056 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
SDC3O75056 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.42□□□□□ -1.86
SDC3O75056 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SDC3O75056 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.41□□□□□ -1.86
SDC3O75056 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SDC3O75056 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.41□□□□□ -1.86
SDC3O75056 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SDC3O75056 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SDC3O75056 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
SDC3O75056 RNA5SP258-201ENST00000362750 119 ntBASIC3.41□□□□□ -1.86
SDC3O75056 Y_RNA.578-201ENST00000390903 88 ntBASIC3.41□□□□□ -1.86
SDC3O75056 AL133264.1-201ENST00000407157 562 ntBASIC3.41□□□□□ -1.86
SDC3O75056 SDCBPP2-201ENST00000424643 885 ntBASIC3.41□□□□□ -1.86
SDC3O75056 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SDC3O75056 RPL31P54-201ENST00000429803 370 ntBASIC3.41□□□□□ -1.86
SDC3O75056 RPL23AP16-201ENST00000441715 421 ntBASIC3.41□□□□□ -1.86
SDC3O75056 COX6CP18-201ENST00000448769 222 ntBASIC3.41□□□□□ -1.86
SDC3O75056 RPL21P104-201ENST00000464143 478 ntBASIC3.41□□□□□ -1.86
SDC3O75056 VPS26AP1-201ENST00000483197 979 ntBASIC3.41□□□□□ -1.86
SDC3O75056 AC079203.1-201ENST00000487972 404 ntBASIC3.41□□□□□ -1.86
SDC3O75056 AC093663.1-201ENST00000497190 394 ntBASIC3.41□□□□□ -1.86
SDC3O75056 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.41□□□□□ -1.86
SDC3O75056 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.41□□□□□ -1.86
SDC3O75056 AC096571.1-202ENST00000506634 735 ntBASIC3.41□□□□□ -1.86
SDC3O75056 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.41□□□□□ -1.86
SDC3O75056 AC010374.2-201ENST00000512933 535 ntBASIC3.41□□□□□ -1.86
SDC3O75056 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.41□□□□□ -1.86
SDC3O75056 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.41□□□□□ -1.86
SDC3O75056 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.41□□□□□ -1.86
SDC3O75056 SNORA19.3-201ENST00000516165 130 ntBASIC3.41□□□□□ -1.86
SDC3O75056 SNORA31.20-201ENST00000517111 133 ntBASIC3.41□□□□□ -1.86
SDC3O75056 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.41□□□□□ -1.86
SDC3O75056 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.41□□□□□ -1.86
SDC3O75056 AP000889.1-201ENST00000530968 660 ntBASIC3.41□□□□□ -1.86
SDC3O75056 AL389895.1-201ENST00000554127 252 ntBASIC3.41□□□□□ -1.86
SDC3O75056 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.41□□□□□ -1.86
SDC3O75056 AC096947.1-201ENST00000603233 470 ntBASIC3.41□□□□□ -1.86
SDC3O75056 AC090425.2-201ENST00000608818 501 ntBASIC3.41□□□□□ -1.86
SDC3O75056 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
SDC3O75056 AC123767.1-202ENST00000620407 817 ntBASIC3.41□□□□□ -1.86
SDC3O75056 MIR8057-201ENST00000620957 69 ntBASIC3.41□□□□□ -1.86
SDC3O75056 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.41□□□□□ -1.86
SDC3O75056 MTND2P41-201ENST00000637599 773 ntBASIC3.41□□□□□ -1.86
SDC3O75056 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.41□□□□□ -1.86
SDC3O75056 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.41□□□□□ -1.86
SDC3O75056 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SDC3O75056 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
SDC3O75056 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
SDC3O75056 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.4□□□□□ -1.86
SDC3O75056 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.4□□□□□ -1.86
SDC3O75056 RIOK3P1-201ENST00000418778 1528 ntBASIC3.4□□□□□ -1.86
SDC3O75056 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
SDC3O75056 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.87
SDC3O75056 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
SDC3O75056 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SDC3O75056 RNU6-989P-201ENST00000362756 107 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 146.3 ms