Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC018644.1-201ENST00000429934 551 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXA3O43365 AC092162.1-201ENST00000432828 434 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXA3O43365 AC024082.2-201ENST00000434771 238 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 HMGB1P18-201ENST00000438801 619 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 MTND1P18-201ENST00000448191 573 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AC104634.1-201ENST00000452720 462 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AC002553.2-201ENST00000453217 340 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXA3O43365 snoU13.20-201ENST00000459180 104 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 RPL21P99-201ENST00000480369 423 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AC023424.1-201ENST00000496058 459 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AC092436.1-201ENST00000506450 503 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 RN7SKP147-201ENST00000517154 244 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 CDH12P4-201ENST00000517835 295 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 CDH12P3-201ENST00000517935 295 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXA3O43365 CDH12P1-201ENST00000518435 295 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.27□□□□□ -1.73
HOXA3O43365 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXA3O43365 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXA3O43365 AP001922.4-201ENST00000526967 290 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXA3O43365 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXA3O43365 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
HOXA3O43365 LSM3P2-201ENST00000551246 273 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXA3O43365 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.27□□□□□ -1.73
HOXA3O43365 AC104687.2-201ENST00000604442 342 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AC009597.2-201ENST00000604659 592 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 IGLCOR22-2-201ENST00000605398 313 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 MIR6748-201ENST00000610433 71 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AC006329.2-201ENST00000611491 394 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AC104237.2-201ENST00000612456 443 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AC100827.5-201ENST00000615883 426 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXA3O43365 AL353662.3-201ENST00000625131 237 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
HOXA3O43365 AC073869.8-201ENST00000641806 335 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA3O43365 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
HOXA3O43365 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA3O43365 AC107027.3-201ENST00000565095 3473 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXA3O43365 AC023421.1-201ENST00000590535 1785 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
HOXA3O43365 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXA3O43365 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXA3O43365 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.27□□□□□ -1.73
HOXA3O43365 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXA3O43365 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
HOXA3O43365 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
HOXA3O43365 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.26□□□□□ -1.73
HOXA3O43365 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA3O43365 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA3O43365 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA3O43365 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
HOXA3O43365 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA3O43365 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA3O43365 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA3O43365 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA3O43365 RN7SKP115-201ENST00000363177 317 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 Y_RNA.184-201ENST00000363884 108 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 Y_RNA.326-201ENST00000365176 113 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 RNU4-66P-201ENST00000365199 138 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 RNU6-38P-201ENST00000384085 107 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 RNU6-339P-201ENST00000384310 107 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 RNU6-831P-201ENST00000384548 107 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 RNU6-178P-201ENST00000384631 104 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 RNU2-47P-201ENST00000410649 186 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 RN7SKP216-201ENST00000411050 312 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXA3O43365 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXA3O43365 RPS12P5-201ENST00000423449 371 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 AC008065.1-201ENST00000428525 348 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXA3O43365 RPL12P46-201ENST00000436610 195 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 AC006466.1-201ENST00000438721 289 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 TRAPPC2P3-201ENST00000443200 321 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 AC016696.1-201ENST00000446949 318 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 RPS17P13-201ENST00000448974 407 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 RNU6-333P-201ENST00000459117 107 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 SNORD125-201ENST00000459538 96 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 AC007537.2-201ENST00000472093 511 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 ST13P14-201ENST00000474095 734 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 AC091885.1-201ENST00000506658 268 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXA3O43365 AC004980.4-201ENST00000513375 203 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXA3O43365 Y_RNA.691-201ENST00000516611 103 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 RNA5SP373-201ENST00000517271 95 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXA3O43365 AC022790.1-201ENST00000522872 204 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 FAM60DP-201ENST00000524174 632 ntBASIC4.26□□□□□ -1.73
HOXA3O43365 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXA3O43365 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXA3O43365 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC4.26□□□□□ -1.73
HOXA3O43365 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXA3O43365 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms