Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 Y_RNA.234-201ENST00000364409 97 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 RNU6-1207P-201ENST00000384343 107 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 RNU6-769P-201ENST00000384407 104 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 Y_RNA.559-201ENST00000384686 107 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 MIR513A2-201ENST00000385249 127 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 RPL37P18-201ENST00000411602 243 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 AC092447.6-201ENST00000414578 210 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 AC245052.5-201ENST00000416320 649 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXN3O00409 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC4.53□□□□□ -1.68
FOXN3O00409 ELOCP18-201ENST00000434209 337 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 USP9YP7-201ENST00000436723 430 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 RPL23AP89-201ENST00000439324 255 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 USP9YP32-201ENST00000452432 430 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 RPS20P32-201ENST00000456044 356 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 MTCO1P42-201ENST00000457379 726 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXN3O00409 RN7SL459P-201ENST00000481078 302 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
FOXN3O00409 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.53□□□□□ -1.68
FOXN3O00409 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC4.53□□□□□ -1.68
FOXN3O00409 AC004069.2-201ENST00000505438 1114 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.53□□□□□ -1.68
FOXN3O00409 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC4.53□□□□□ -1.68
FOXN3O00409 TXNP6-201ENST00000510190 310 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 AF213884.2-201ENST00000510417 903 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 RNA5SP519-201ENST00000516480 119 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 IFITM8P-201ENST00000522529 394 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 AP000873.5-201ENST00000533906 236 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC4.53□□□□□ -1.68
FOXN3O00409 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.53□□□□□ -1.68
FOXN3O00409 CR383656.6-201ENST00000550518 394 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.53□□□□□ -1.68
FOXN3O00409 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.53□□□□□ -1.68
FOXN3O00409 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXN3O00409 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC4.53□□□□□ -1.68
FOXN3O00409 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.53□□□□□ -1.68
FOXN3O00409 MIR3611-201ENST00000584484 83 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXN3O00409 AC068790.4-201ENST00000602474 263 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 AC008745.1-201ENST00000604064 271 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 AC011816.2-201ENST00000607089 556 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 AL121873.1-201ENST00000616013 524 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 AC009878.1-201ENST00000621819 340 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
FOXN3O00409 AC011266.1-201ENST00000624119 3569 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXN3O00409 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXN3O00409 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
FOXN3O00409 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXN3O00409 AC092104.1-201ENST00000497346 1441 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXN3O00409 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXN3O00409 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.53□□□□□ -1.68
FOXN3O00409 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.53□□□□□ -1.68
FOXN3O00409 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXN3O00409 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXN3O00409 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.69
FOXN3O00409 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXN3O00409 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.52□□□□□ -1.69
FOXN3O00409 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
FOXN3O00409 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXN3O00409 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
FOXN3O00409 MTND5P3-201ENST00000438536 1800 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXN3O00409 RNA5SP388-201ENST00000362584 119 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 RNU5E-5P-201ENST00000365379 116 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
FOXN3O00409 RNU6-533P-201ENST00000384144 107 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 SNORA37-201ENST00000384504 129 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
FOXN3O00409 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXN3O00409 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.52□□□□□ -1.69
FOXN3O00409 COX6CP17-201ENST00000421389 185 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 AC068287.1-201ENST00000430283 295 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC4.52□□□□□ -1.69
FOXN3O00409 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC4.52□□□□□ -1.69
FOXN3O00409 AL353706.1-201ENST00000436728 494 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC4.52□□□□□ -1.69
FOXN3O00409 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC4.52□□□□□ -1.69
FOXN3O00409 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.52□□□□□ -1.69
FOXN3O00409 RN7SL738P-201ENST00000470264 297 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 RN7SL585P-201ENST00000470538 280 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 RPS29P19-201ENST00000479709 171 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC4.52□□□□□ -1.69
FOXN3O00409 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
FOXN3O00409 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
FOXN3O00409 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.52□□□□□ -1.69
FOXN3O00409 RNA5SP309-201ENST00000516670 106 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 RNU6-714P-201ENST00000516963 103 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 RNU4-60P-201ENST00000517239 135 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 CDH12P4-201ENST00000517835 295 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 CDH12P3-201ENST00000517935 295 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 CDH12P1-201ENST00000518435 295 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
FOXN3O00409 MTCYBP20-201ENST00000524239 1129 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 AP002748.2-201ENST00000528671 348 ntBASIC4.52□□□□□ -1.69
FOXN3O00409 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.52□□□□□ -1.69
FOXN3O00409 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.52□□□□□ -1.69
FOXN3O00409 AC069240.1-201ENST00000548774 375 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms