Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 MIR514A3-201ENST00000385132 88 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 HMGB3P7-201ENST00000400214 611 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 AL356057.3-201ENST00000402607 340 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 AL023807.1-201ENST00000407932 359 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 MTCO2P27-201ENST00000420740 428 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 BEND7P1-201ENST00000422058 457 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 RPL23AP74-201ENST00000437246 471 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 PRPF38AP2-201ENST00000438179 851 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 AC012512.1-201ENST00000446594 718 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 RPS3AP41-201ENST00000462701 778 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 RPS4XP10-201ENST00000465034 731 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 RPS23P1-201ENST00000491662 432 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 KLHL2P1-201ENST00000508691 521 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 COX6B1P5-201ENST00000509843 249 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 RNU4-29P-201ENST00000515943 174 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 AP003497.1-201ENST00000528472 562 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 AC103843.2-201ENST00000530523 682 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 RN7SL290P-201ENST00000578661 300 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 AC100830.2-201ENST00000581636 240 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 UBE2L4-201ENST00000587688 464 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 AP001330.4-201ENST00000604350 154 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 AC087783.2-201ENST00000605070 562 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 AC243654.2-201ENST00000612843 443 ntBASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
CHMP3Q9Y3E7 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 OR5P1P-201ENST00000299512 925 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 AC067945.1-201ENST00000342609 618 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 AL161781.1-201ENST00000354277 403 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 Y_RNA.31-201ENST00000362574 102 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 RN7SKP95-201ENST00000362860 303 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 Y_RNA.133-201ENST00000363428 110 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 Y_RNA.367-201ENST00000365544 101 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 SNORA22B-201ENST00000383876 138 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 RNU6-1297P-201ENST00000384415 104 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 RNU6-308P-201ENST00000390957 107 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 RPL34P6-201ENST00000432390 345 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 BX323845.1-201ENST00000432417 179 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 DDX3P2-201ENST00000446138 111 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 AC090804.1-201ENST00000448870 490 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 GMFBP1-201ENST00000467831 427 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 VN1R17P-201ENST00000472048 1090 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 AC093267.1-201ENST00000489176 961 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 AC140172.1-201ENST00000502928 141 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 AC018797.3-201ENST00000513388 1241 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 SNORA25.17-201ENST00000517184 124 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 RPL7P20-201ENST00000520308 745 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 EIF4A2P5-201ENST00000529914 499 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 OR5D15P-201ENST00000531671 942 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 AC011487.3-201ENST00000593607 453 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 FAM25E-202ENST00000608562 189 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 AL132822.1-201ENST00000617063 513 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 MIR6839-201ENST00000620425 113 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 BMPR1APS1-201ENST00000403332 1598 ntBASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
CHMP3Q9Y3E7 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 AP004289.2-201ENST00000444413 1457 ntBASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC6.34□□□□□ -1.39
CHMP3Q9Y3E7 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms