Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC004972.1-201ENST00000623934 2209 ntBASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
VPS54Q9P1Q0 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 MIR208A-201ENST00000362287 71 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 TAF9BP1-201ENST00000396646 746 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 SKINT1L-201ENST00000401057 817 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 MIR1250-201ENST00000408098 113 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 USP9YP21-201ENST00000420603 432 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 C1DP1-201ENST00000426049 402 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 AC096632.1-201ENST00000427395 310 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 USP9YP31-201ENST00000431405 881 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 PTGES3P1-201ENST00000439531 483 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 MRPL42P4-201ENST00000453267 443 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 BX510359.1-201ENST00000456973 237 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 AP001207.2-201ENST00000519490 539 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 NDUFS5P6-201ENST00000529136 295 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 CD69-203ENST00000536709 1020 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 MIR5680-201ENST00000577577 84 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 AL606834.3-201ENST00000602615 496 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 AL445435.1-201ENST00000604232 665 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 AC093673.2-201ENST00000609674 331 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 AC073476.4-201ENST00000628409 72 ntBASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS54Q9P1Q0 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AL021368.2-201ENST00000606125 5352 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 SNORA31-201ENST00000362607 130 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 RNU6-582P-201ENST00000362989 107 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 SNORD56.3-201ENST00000363507 71 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 SNORD116-23-201ENST00000384645 92 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 RPS7P9-201ENST00000414704 586 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 GTF2IP23-201ENST00000423746 351 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AL353705.1-201ENST00000433468 480 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 B3GNT2P1-201ENST00000434960 952 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 TXNP1-201ENST00000441872 371 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 COX6CP18-201ENST00000448769 222 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 NDUFA5P7-201ENST00000452914 242 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AC010468.1-201ENST00000461022 817 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 RPL23AP14-201ENST00000468281 468 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 SNORA64.4-201ENST00000516632 81 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 RNA5SP135-201ENST00000517019 125 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 RNU6-1028P-201ENST00000517164 93 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 MTCO3P15-201ENST00000526563 574 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 HIGD1AP10-201ENST00000527837 282 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AC118942.1-201ENST00000529674 1035 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 YWHAZP1-201ENST00000556286 722 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 SNORD39.3-201ENST00000584451 71 ntBASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS54Q9P1Q0 AL031985.2-201ENST00000600955 480 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms