Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL049714.1-201ENST00000466686 347 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 RPL36AP51-201ENST00000487216 318 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AC021146.1-201ENST00000511202 716 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AC017037.2-201ENST00000513850 890 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AC103783.1-201ENST00000520506 373 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 OR4R1P-201ENST00000529879 463 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AC104383.1-201ENST00000530297 370 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AP000857.1-201ENST00000532151 543 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 CR383656.7-201ENST00000548164 174 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 OR4T1P-201ENST00000554933 911 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 RPL21P12-201ENST00000559810 515 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 OR1F2P-201ENST00000570470 933 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 TVP23CP2-201ENST00000571473 623 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AC010928.1-201ENST00000592477 1447 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AC093788.1-201ENST00000609356 927 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AC063943.3-201ENST00000615562 356 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 MIR6730-201ENST00000622213 67 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 DUXAP9-208ENST00000622815 614 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AL356585.4-201ENST00000623078 1229 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AC009033.1-201ENST00000624279 431 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.93□□□□□ -1.62
TRIM39Q9HCM9 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AC126323.6-202ENST00000568092 3511 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 OR1S2-201ENST00000302592 978 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 RNU6-876P-201ENST00000391295 104 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 RN7SKP16-201ENST00000410180 299 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 RNU6-516P-201ENST00000411381 104 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AL590762.4-201ENST00000425885 253 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 CYCSP24-201ENST00000445119 316 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 MTND5P20-201ENST00000448677 143 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AC009963.2-201ENST00000453431 138 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AC021660.1-201ENST00000465006 554 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AP001922.4-201ENST00000526967 290 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 EDDM3DP-201ENST00000554692 434 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 HMGB1P6-201ENST00000569046 646 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AC098848.2-201ENST00000588023 330 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 Z84480.1-201ENST00000605131 311 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AL136363.1-201ENST00000605349 337 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 BX323046.1-201ENST00000610145 535 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AL020991.1-201ENST00000612314 373 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AC099669.2-201ENST00000616549 437 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 AC063976.2-201ENST00000425667 3556 ntBASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.92□□□□□ -1.62
TRIM39Q9HCM9 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 SNORA72.1-201ENST00000363485 129 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 Y_RNA.303-201ENST00000364998 94 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 RNU11-4P-201ENST00000391149 133 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 RPS4XP8-201ENST00000402039 771 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 RN7SKP247-201ENST00000411094 308 ntBASIC4.91□□□□□ -1.62
TRIM39Q9HCM9 AMD1P2-201ENST00000412936 992 ntBASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms