Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC117525.1-201ENST00000515228 503 ntBASIC3.1□□□□□ -1.91
CCDC112Q8NEF3 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC112Q8NEF3 H3F3AP1-201ENST00000559984 334 ntBASIC3.1□□□□□ -1.91
CCDC112Q8NEF3 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC112Q8NEF3 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC112Q8NEF3 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC112Q8NEF3 ZNF92P3-201ENST00000596594 954 ntBASIC3.1□□□□□ -1.91
CCDC112Q8NEF3 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC112Q8NEF3 YWHAQP7-201ENST00000603536 658 ntBASIC3.1□□□□□ -1.91
CCDC112Q8NEF3 BNIP3P11-201ENST00000603878 563 ntBASIC3.1□□□□□ -1.91
CCDC112Q8NEF3 AC026422.1-201ENST00000623961 452 ntBASIC3.1□□□□□ -1.91
CCDC112Q8NEF3 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
CCDC112Q8NEF3 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC112Q8NEF3 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC112Q8NEF3 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC112Q8NEF3 AL049737.1-201ENST00000413920 1403 ntBASIC3.1□□□□□ -1.91
CCDC112Q8NEF3 SNORA54-201ENST00000384281 123 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 RN7SKP220-201ENST00000410611 288 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 RNU2-71P-201ENST00000411395 189 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AL049873.1-201ENST00000480540 376 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 MTND3P6-201ENST00000485242 339 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AC069306.1-201ENST00000507006 843 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AC026412.2-201ENST00000512270 1075 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AC108120.2-201ENST00000512973 294 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 RNU6-1073P-201ENST00000517182 106 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 HMGB1P41-201ENST00000520234 440 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 IGLVIV-66-1-201ENST00000521832 460 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 MIR4513-201ENST00000581077 86 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AL137246.1-201ENST00000607072 977 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AC093732.2-201ENST00000607950 274 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AC005046.1-201ENST00000608515 625 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AC022509.4-201ENST00000621404 572 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AC090617.7-201ENST00000623952 126 ntBASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC112Q8NEF3 AC004925.1-201ENST00000624256 2706 ntBASIC3.09□□□□□ -1.92
CCDC112Q8NEF3 MTCO1P8-201ENST00000416914 1523 ntBASIC3.09□□□□□ -1.92
CCDC112Q8NEF3 AC073055.1-201ENST00000456901 1621 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AC092593.1-201ENST00000515413 1815 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 DEFA7P-201ENST00000382676 285 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AL122016.1-201ENST00000403365 367 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 SSXP9-201ENST00000417503 292 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AC023128.2-201ENST00000420880 1223 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 HSPE1P1-201ENST00000421494 318 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AL513175.2-201ENST00000422071 443 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 RPL21P66-201ENST00000426566 466 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 RPL21P40-201ENST00000428586 483 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 RPL23AP74-201ENST00000437246 471 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AC027673.1-201ENST00000456245 405 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AP001486.1-201ENST00000463339 476 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 HMGN2P13-201ENST00000476476 274 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AC011825.1-201ENST00000484967 388 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 HMGB1P51-201ENST00000605166 638 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AL390240.1-201ENST00000612950 384 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AC079228.1-201ENST00000624774 1049 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AC011978.2-201ENST00000569835 2054 ntBASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
CCDC112Q8NEF3 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 ZNF807-201ENST00000328088 1707 ntBASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 AC105402.1-201ENST00000413336 545 ntBASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 snoU13.7-201ENST00000459220 104 ntBASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 RNU6-56P-201ENST00000516986 93 ntBASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 AP002812.4-201ENST00000532139 286 ntBASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 AC006386.2-201ENST00000624491 75 ntBASIC3.07□□□□□ -1.92
CCDC112Q8NEF3 AC012005.1-201ENST00000624575 75 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 151.2 ms