Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 FABP7P2-201ENST00000429946 379 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 SNAP23P1-201ENST00000433229 246 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 RPL12P11-201ENST00000439970 501 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC243772.1-201ENST00000451620 410 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 RPL30P15-201ENST00000457129 321 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 RN7SL717P-201ENST00000478343 297 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 RPL7P51-201ENST00000490532 749 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 HMGN1P9-201ENST00000515212 298 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 RPS27AP18-201ENST00000515536 459 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 RNU6-273P-201ENST00000516937 96 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 IGKV3D-34-201ENST00000522638 302 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AP004607.2-201ENST00000533949 322 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 OR11H5P-201ENST00000554039 926 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 MIR4310-201ENST00000582950 57 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC123786.2-201ENST00000603459 275 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC108738.1-201ENST00000603703 237 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC104662.1-201ENST00000604448 511 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC000068.2-201ENST00000608816 460 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC103705.1-201ENST00000619013 241 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 U4.1-201ENST00000620349 87 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AC074140.1-201ENST00000621617 208 ntBASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
UBE3DQ7Z6J8 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 OR55B1P-203ENST00000641518 2602 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AC093775.1-201ENST00000624154 1868 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 BRAFP1-201ENST00000445336 2703 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 RN7SKP69-201ENST00000365390 305 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 RNU6-1040P-201ENST00000383974 107 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 RNU6-1032P-201ENST00000384100 107 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 RNU6-601P-201ENST00000384540 107 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 UBE2V1P2-201ENST00000397758 440 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 RNA5SP178-201ENST00000410380 128 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 Z93019.1-201ENST00000416450 973 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 RPL31P12-201ENST00000422587 358 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AC018865.2-201ENST00000423631 129 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AL451139.1-201ENST00000434718 346 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 Z95327.1-201ENST00000446082 482 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AC105399.1-202ENST00000447303 205 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 DHFRP3-201ENST00000455595 559 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 RNU6-1038P-201ENST00000516516 104 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 FAM60DP-201ENST00000524174 632 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AC124068.1-201ENST00000563131 678 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 MIR3672-201ENST00000584290 82 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AF038458.1-201ENST00000588406 262 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AC092747.3-201ENST00000603769 301 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 AC010680.4-201ENST00000605334 543 ntBASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
UBE3DQ7Z6J8 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 170.3 ms