Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC5.51□□□□□ -1.53
SOX4Q06945 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
SOX4Q06945 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SOX4Q06945 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SOX4Q06945 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
SOX4Q06945 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.51□□□□□ -1.53
SOX4Q06945 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SOX4Q06945 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
SOX4Q06945 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SOX4Q06945 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SOX4Q06945 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
SOX4Q06945 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
SOX4Q06945 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.5□□□□□ -1.53
SOX4Q06945 Y_RNA.149-201ENST00000363558 117 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 Y_RNA.158-201ENST00000363651 101 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 Y_RNA.188-201ENST00000363952 111 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 RNU6-702P-201ENST00000364982 107 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 AL590609.2-201ENST00000421430 368 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 RPL31P12-201ENST00000422587 358 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 TIMM9P1-201ENST00000436122 256 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 TXNP1-201ENST00000441872 371 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 CECR9-201ENST00000453421 199 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 ELOCP24-201ENST00000456370 334 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 AC005229.2-201ENST00000456995 399 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 RPL30P15-201ENST00000457129 321 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 RNU7-182P-201ENST00000459009 62 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 AL049874.2-201ENST00000492636 288 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.5□□□□□ -1.53
SOX4Q06945 AC092436.1-201ENST00000506450 503 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 RNA5SP43-201ENST00000516559 110 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC5.5□□□□□ -1.53
SOX4Q06945 AP000889.2-201ENST00000532684 490 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 MGST1-215ENST00000540056 546 ntTSL 3 BASIC5.5□□□□□ -1.53
SOX4Q06945 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC5.5□□□□□ -1.53
SOX4Q06945 RN7SL290P-201ENST00000578661 300 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 AC060771.1-201ENST00000582031 164 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 UBE2L4-201ENST00000587688 464 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC5.5□□□□□ -1.53
SOX4Q06945 AL592436.1-201ENST00000605135 558 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 FAM25E-202ENST00000608562 189 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 AL049539.1-201ENST00000611964 459 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 EIF3FP1-201ENST00000613970 806 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 AC083806.3-201ENST00000614016 455 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 AC091905.4-201ENST00000623432 202 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 AL353662.3-201ENST00000625131 237 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 AL159972.1-201ENST00000625150 448 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.5□□□□□ -1.53
SOX4Q06945 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.5□□□□□ -1.53
SOX4Q06945 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
SOX4Q06945 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX4Q06945 MTND5P19-201ENST00000424872 1794 ntBASIC5.5□□□□□ -1.53
SOX4Q06945 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.49□□□□□ -1.53
SOX4Q06945 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SOX4Q06945 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.49□□□□□ -1.53
SOX4Q06945 IRF5P1-201ENST00000504852 2164 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
SOX4Q06945 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.49□□□□□ -1.53
SOX4Q06945 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SOX4Q06945 HSPE1P11-201ENST00000339579 310 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 Y_RNA.47-201ENST00000362697 108 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 RNU6-1188P-201ENST00000363795 107 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 SNORA62.1-201ENST00000364287 154 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 RNY3P13-201ENST00000365542 102 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 MIR585-201ENST00000384887 94 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
SOX4Q06945 RNA5SP241-201ENST00000391326 114 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 DSTNP4-201ENST00000399472 474 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 AL133270.1-201ENST00000402635 279 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.49□□□□□ -1.53
SOX4Q06945 OR2AM1P-201ENST00000422137 422 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 AL160004.2-201ENST00000432935 350 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 MTATP6P16-201ENST00000434543 526 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.49□□□□□ -1.53
SOX4Q06945 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC5.49□□□□□ -1.53
SOX4Q06945 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.49□□□□□ -1.53
SOX4Q06945 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC5.49□□□□□ -1.53
SOX4Q06945 TRBV26-201ENST00000456572 344 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 RPS3AP41-201ENST00000462701 778 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 RN7SL283P-201ENST00000489055 303 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 ALDH7A1P3-201ENST00000492517 345 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC5.49□□□□□ -1.53
SOX4Q06945 COX6B1P5-201ENST00000509843 249 ntBASIC5.49□□□□□ -1.53
SOX4Q06945 LIAS-206ENST00000513731 826 ntTSL 5 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 198.4 ms