Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXA1P49639 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXA1P49639 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
HOXA1P49639 RPL23AP57-201ENST00000332361 466 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 FGF7P2-201ENST00000332473 296 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXA1P49639 Y_RNA.41-201ENST00000362646 102 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXA1P49639 RNU6-348P-201ENST00000384386 107 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 BTBD10P2-201ENST00000404779 676 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 MIR1911-201ENST00000410783 80 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 RN7SKP106-201ENST00000410832 272 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 Y_RNA.619-201ENST00000410951 90 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 SNORA74C-2-201ENST00000411179 201 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.56□□□□□ -1.84
HOXA1P49639 OFD1P18Y-201ENST00000420889 959 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA1P49639 OR5BE1P-201ENST00000425977 939 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXA1P49639 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXA1P49639 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA1P49639 USP9YP28-201ENST00000435142 589 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 MTCYBP45-201ENST00000435243 565 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXA1P49639 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA1P49639 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA1P49639 USP9YP34-201ENST00000453983 808 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXA1P49639 OR6K1P-201ENST00000456766 971 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXA1P49639 AC011825.1-201ENST00000484967 388 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA1P49639 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA1P49639 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA1P49639 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA1P49639 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXA1P49639 IGKV2D-36-201ENST00000518643 226 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.56□□□□□ -1.84
HOXA1P49639 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA1P49639 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA1P49639 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.56□□□□□ -1.84
HOXA1P49639 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA1P49639 AC044860.2-201ENST00000561005 179 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXA1P49639 MIR5697-201ENST00000578045 78 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXA1P49639 AP001180.3-201ENST00000582221 145 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 AC005255.1-201ENST00000593748 216 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXA1P49639 AC073648.5-201ENST00000603502 305 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 AC018445.2-201ENST00000622987 260 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 AP000843.1-201ENST00000624880 701 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 CYP3A51P-201ENST00000633513 256 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 AC093591.3-201ENST00000634516 308 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 FAM157B-203ENST00000639350 358 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 OR5BE1P-202ENST00000641168 1176 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXA1P49639 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
HOXA1P49639 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXA1P49639 AL592148.3-201ENST00000608771 2646 ntBASIC3.56□□□□□ -1.84
HOXA1P49639 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA1P49639 RIOK3P1-201ENST00000418778 1528 ntBASIC3.55□□□□□ -1.84
HOXA1P49639 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
HOXA1P49639 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA1P49639 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXA1P49639 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
HOXA1P49639 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA1P49639 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXA1P49639 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
HOXA1P49639 RNU5E-5P-201ENST00000365379 116 ntBASIC3.55□□□□□ -1.84
HOXA1P49639 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA1P49639 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
HOXA1P49639 RNU6-192P-201ENST00000391253 100 ntBASIC3.55□□□□□ -1.84
HOXA1P49639 AL133270.1-201ENST00000402635 279 ntBASIC3.55□□□□□ -1.84
HOXA1P49639 MTHFD2P2-201ENST00000407725 247 ntBASIC3.55□□□□□ -1.84
HOXA1P49639 SNORA3C-201ENST00000408792 125 ntBASIC3.55□□□□□ -1.84
HOXA1P49639 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA1P49639 RN7SKP100-201ENST00000411258 284 ntBASIC3.55□□□□□ -1.84
HOXA1P49639 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA1P49639 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXA1P49639 RPL17P12-201ENST00000413391 526 ntBASIC3.55□□□□□ -1.84
HOXA1P49639 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA1P49639 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA1P49639 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXA1P49639 GLRXP1-201ENST00000423261 334 ntBASIC3.55□□□□□ -1.84
HOXA1P49639 AL356583.2-201ENST00000426536 280 ntBASIC3.55□□□□□ -1.84
HOXA1P49639 AC104651.1-201ENST00000427559 735 ntBASIC3.55□□□□□ -1.84
HOXA1P49639 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXA1P49639 OR51AB1P-201ENST00000429046 620 ntBASIC3.55□□□□□ -1.84
HOXA1P49639 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA1P49639 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA1P49639 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXA1P49639 RSU1P2-202ENST00000437884 485 ntBASIC3.55□□□□□ -1.84
HOXA1P49639 SNRPEP7-201ENST00000438350 220 ntBASIC3.55□□□□□ -1.84
HOXA1P49639 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXA1P49639 AC127537.2-201ENST00000439258 465 ntBASIC3.55□□□□□ -1.84
HOXA1P49639 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXA1P49639 CDC27P1-201ENST00000445384 715 ntBASIC3.55□□□□□ -1.84
HOXA1P49639 AC239367.2-201ENST00000447309 705 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms