Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL8A1P27658 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL8A1P27658 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.33□□□□□ -1.56
COL8A1P27658 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL8A1P27658 TRIM51GP-201ENST00000534741 1350 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL8A1P27658 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL8A1P27658 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL8A1P27658 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL8A1P27658 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL8A1P27658 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL8A1P27658 Y_RNA.43-201ENST00000362670 111 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 RNY1P16-201ENST00000363063 111 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 Y_RNA.353-201ENST00000365440 108 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.33□□□□□ -1.56
COL8A1P27658 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL8A1P27658 RNU6-393P-201ENST00000384475 107 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 MIR628-201ENST00000385229 95 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 MIR550A3-201ENST00000390735 95 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 RNU6-174P-201ENST00000410406 106 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC5.33□□□□□ -1.56
COL8A1P27658 HMGN1P24-201ENST00000412282 298 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.33□□□□□ -1.56
COL8A1P27658 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL8A1P27658 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC5.33□□□□□ -1.56
COL8A1P27658 AC126120.1-201ENST00000431082 470 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 AC016696.1-201ENST00000446949 318 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC5.33□□□□□ -1.56
COL8A1P27658 AC005229.2-201ENST00000456995 399 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.33□□□□□ -1.56
COL8A1P27658 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC5.33□□□□□ -1.56
COL8A1P27658 AC084198.1-201ENST00000477747 402 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 AC092865.4-201ENST00000477936 615 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC5.33□□□□□ -1.56
COL8A1P27658 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC5.33□□□□□ -1.56
COL8A1P27658 RPS24P16-201ENST00000497294 392 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 AC016559.2-201ENST00000510759 359 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 SNORA43.3-201ENST00000517240 103 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.33□□□□□ -1.56
COL8A1P27658 AC090615.1-201ENST00000577519 154 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC5.33□□□□□ -1.56
COL8A1P27658 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.33□□□□□ -1.56
COL8A1P27658 AL078605.1-201ENST00000603529 500 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 AC097467.4-201ENST00000605504 141 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 AL365222.1-201ENST00000614661 98 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 TEX41-280ENST00000629185 591 ntTSL 5 BASIC5.33□□□□□ -1.56
COL8A1P27658 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC5.33□□□□□ -1.56
COL8A1P27658 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL8A1P27658 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL8A1P27658 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL8A1P27658 AL121950.1-201ENST00000624993 2077 ntBASIC5.33□□□□□ -1.56
COL8A1P27658 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL8A1P27658 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC5.33□□□□□ -1.56
COL8A1P27658 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL8A1P27658 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
COL8A1P27658 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC5.32□□□□□ -1.56
COL8A1P27658 AC105114.1-201ENST00000624795 1862 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 MAPK10-261ENST00000641050 3109 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC5.32□□□□□ -1.56
COL8A1P27658 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL8A1P27658 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL8A1P27658 MAPK10-287ENST00000641217 3037 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
COL8A1P27658 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC5.32□□□□□ -1.56
COL8A1P27658 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL8A1P27658 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL8A1P27658 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.32□□□□□ -1.56
COL8A1P27658 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
COL8A1P27658 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL8A1P27658 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
COL8A1P27658 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL8A1P27658 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL8A1P27658 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL8A1P27658 AP000547.3-204ENST00000588548 2523 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
COL8A1P27658 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.32□□□□□ -1.56
COL8A1P27658 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL8A1P27658 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
COL8A1P27658 RNA5SP507-201ENST00000363603 121 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 RNU1-85P-201ENST00000364127 164 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 Y_RNA.398-201ENST00000383952 99 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 RNU6-434P-201ENST00000384376 107 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 SNORD115-46-201ENST00000390982 71 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 AL023807.1-201ENST00000407932 359 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 SYF2P2-201ENST00000417620 583 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 AL590233.1-201ENST00000430017 456 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 RAC1P7-201ENST00000445367 377 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL8A1P27658 TPT1P12-201ENST00000448968 492 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC5.32□□□□□ -1.56
COL8A1P27658 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC5.32□□□□□ -1.56
COL8A1P27658 RN7SL269P-201ENST00000467795 305 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 RPS4XP1-201ENST00000482189 787 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 AC108078.2-201ENST00000510750 236 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC5.32□□□□□ -1.56
COL8A1P27658 FAM60DP-201ENST00000524174 632 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 AC009852.2-201ENST00000567898 485 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 PSMA6P4-201ENST00000603247 718 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 AL445647.2-201ENST00000615170 130 ntBASIC5.32□□□□□ -1.56
COL8A1P27658 AL359547.2-201ENST00000615810 418 ntBASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms