Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SDC1P18827 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC1P18827 AC005476.1-201ENST00000554427 397 ntBASIC3.22□□□□□ -1.89
SDC1P18827 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
SDC1P18827 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.22□□□□□ -1.89
SDC1P18827 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.22□□□□□ -1.89
SDC1P18827 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC1P18827 AL049838.1-201ENST00000563647 981 ntBASIC3.22□□□□□ -1.89
SDC1P18827 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.22□□□□□ -1.89
SDC1P18827 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC1P18827 AL669831.4-202ENST00000590817 238 ntBASIC3.22□□□□□ -1.89
SDC1P18827 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.22□□□□□ -1.89
SDC1P18827 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SDC1P18827 AC006557.5-201ENST00000603126 811 ntBASIC3.22□□□□□ -1.89
SDC1P18827 AL035411.2-201ENST00000604022 421 ntBASIC3.22□□□□□ -1.89
SDC1P18827 AC112230.1-201ENST00000604342 547 ntBASIC3.22□□□□□ -1.89
SDC1P18827 AC012531.5-201ENST00000611375 151 ntBASIC3.22□□□□□ -1.89
SDC1P18827 AL450489.1-201ENST00000612071 468 ntBASIC3.22□□□□□ -1.89
SDC1P18827 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
SDC1P18827 U73479.1-201ENST00000618062 168 ntBASIC3.22□□□□□ -1.89
SDC1P18827 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC3.22□□□□□ -1.89
SDC1P18827 AC127502.3-201ENST00000636170 1206 ntBASIC3.22□□□□□ -1.89
SDC1P18827 MIR7153-201ENST00000637758 57 ntBASIC3.22□□□□□ -1.89
SDC1P18827 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC3.22□□□□□ -1.89
SDC1P18827 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
SDC1P18827 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SDC1P18827 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SDC1P18827 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.22□□□□□ -1.89
SDC1P18827 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SDC1P18827 AL356274.2-201ENST00000624379 3752 ntBASIC3.22□□□□□ -1.89
SDC1P18827 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SDC1P18827 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
SDC1P18827 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.21□□□□□ -1.89
SDC1P18827 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.21□□□□□ -1.89
SDC1P18827 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.21□□□□□ -1.89
SDC1P18827 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SDC1P18827 AL136310.1-201ENST00000404926 654 ntBASIC3.21□□□□□ -1.9
SDC1P18827 MIR1193-201ENST00000408109 78 ntBASIC3.21□□□□□ -1.9
SDC1P18827 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SDC1P18827 MRPS36P1-201ENST00000421291 307 ntBASIC3.21□□□□□ -1.9
SDC1P18827 AC244098.2-201ENST00000422068 99 ntBASIC3.21□□□□□ -1.9
SDC1P18827 AC092648.1-201ENST00000425870 423 ntBASIC3.21□□□□□ -1.9
SDC1P18827 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.21□□□□□ -1.9
SDC1P18827 AL138799.3-201ENST00000438968 350 ntBASIC3.21□□□□□ -1.9
SDC1P18827 AC127537.2-201ENST00000439258 465 ntBASIC3.21□□□□□ -1.9
SDC1P18827 AL645638.1-201ENST00000440519 361 ntBASIC3.21□□□□□ -1.9
SDC1P18827 AL589880.1-201ENST00000448271 287 ntBASIC3.21□□□□□ -1.9
SDC1P18827 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.21□□□□□ -1.9
SDC1P18827 ZNF886P-201ENST00000450781 723 ntBASIC3.21□□□□□ -1.9
SDC1P18827 RBMY2UP-201ENST00000453474 324 ntBASIC3.21□□□□□ -1.9
SDC1P18827 PTGES3P5-201ENST00000455109 434 ntBASIC3.21□□□□□ -1.9
SDC1P18827 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC3.21□□□□□ -1.9
SDC1P18827 CEACAMP4-201ENST00000457676 421 ntBASIC3.21□□□□□ -1.9
SDC1P18827 TRAV31-201ENST00000502780 342 ntBASIC3.21□□□□□ -1.9
SDC1P18827 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.21□□□□□ -1.9
SDC1P18827 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.21□□□□□ -1.9
SDC1P18827 TPT1P8-201ENST00000510120 555 ntBASIC3.21□□□□□ -1.9
SDC1P18827 MTND4LP31-201ENST00000514859 294 ntBASIC3.21□□□□□ -1.9
SDC1P18827 RNU6-1225P-201ENST00000516336 65 ntBASIC3.21□□□□□ -1.9
SDC1P18827 RN7SKP116-201ENST00000516902 319 ntBASIC3.21□□□□□ -1.9
SDC1P18827 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC3.21□□□□□ -1.9
SDC1P18827 OR4R3P-201ENST00000525084 838 ntBASIC3.21□□□□□ -1.9
SDC1P18827 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.21□□□□□ -1.9
SDC1P18827 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.21□□□□□ -1.9
SDC1P18827 MTND1P8-201ENST00000571424 950 ntBASIC3.21□□□□□ -1.9
SDC1P18827 LARP7P2-201ENST00000575306 125 ntBASIC3.21□□□□□ -1.9
SDC1P18827 RN7SL339P-201ENST00000580597 296 ntBASIC3.21□□□□□ -1.9
SDC1P18827 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.21□□□□□ -1.9
SDC1P18827 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.21□□□□□ -1.9
SDC1P18827 AC006254.3-201ENST00000603353 884 ntBASIC3.21□□□□□ -1.9
SDC1P18827 AC124312.4-201ENST00000605533 310 ntBASIC3.21□□□□□ -1.9
SDC1P18827 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.21□□□□□ -1.9
SDC1P18827 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.21□□□□□ -1.9
SDC1P18827 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.21□□□□□ -1.9
SDC1P18827 AC009093.8-201ENST00000641769 292 ntBASIC3.21□□□□□ -1.9
SDC1P18827 AL133383.2-201ENST00000622958 2336 ntBASIC3.21□□□□□ -1.9
SDC1P18827 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
SDC1P18827 AC010733.2-201ENST00000589496 5702 ntBASIC3.21□□□□□ -1.9
SDC1P18827 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
SDC1P18827 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
SDC1P18827 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SDC1P18827 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SDC1P18827 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SDC1P18827 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
SDC1P18827 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.2□□□□□ -1.9
SDC1P18827 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SDC1P18827 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SDC1P18827 RNU4-35P-201ENST00000362588 141 ntBASIC3.2□□□□□ -1.9
SDC1P18827 RNVU1-3-201ENST00000364313 161 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AC016769.3-201ENST00000396562 315 ntBASIC3.2□□□□□ -1.9
SDC1P18827 ARF4P3-201ENST00000397387 509 ntBASIC3.2□□□□□ -1.9
SDC1P18827 MTND4LP20-201ENST00000402379 270 ntBASIC3.2□□□□□ -1.9
SDC1P18827 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SDC1P18827 AL024474.1-201ENST00000404655 591 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AL450338.1-201ENST00000407987 512 ntBASIC3.2□□□□□ -1.9
SDC1P18827 RNA5SP107-201ENST00000411358 122 ntBASIC3.2□□□□□ -1.9
SDC1P18827 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.2□□□□□ -1.9
SDC1P18827 RAB9AP3-201ENST00000412737 573 ntBASIC3.2□□□□□ -1.9
SDC1P18827 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
SDC1P18827 AL356320.2-201ENST00000417263 507 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms