Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC3.64□□□□□ -1.83
LMX1BO60663 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
LMX1BO60663 AC006133.1-201ENST00000617106 264 ntBASIC3.64□□□□□ -1.83
LMX1BO60663 AC138932.5-201ENST00000617759 563 ntBASIC3.64□□□□□ -1.83
LMX1BO60663 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.64□□□□□ -1.83
LMX1BO60663 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
LMX1BO60663 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.64□□□□□ -1.83
LMX1BO60663 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.64□□□□□ -1.83
LMX1BO60663 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
LMX1BO60663 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
LMX1BO60663 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
LMX1BO60663 LINC00561-201ENST00000565815 2738 ntBASIC3.64□□□□□ -1.83
LMX1BO60663 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.64□□□□□ -1.83
LMX1BO60663 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC3.63□□□□□ -1.83
LMX1BO60663 LARP1BP1-201ENST00000506036 1359 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
LMX1BO60663 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
LMX1BO60663 Z82217.1-201ENST00000625157 8149 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
LMX1BO60663 AL031985.3-201ENST00000565390 2449 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 AL158163.1-201ENST00000603915 1649 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
LMX1BO60663 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
LMX1BO60663 AC016716.1-201ENST00000265882 708 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 RNA5SP283-201ENST00000365604 119 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC3.63□□□□□ -1.83
LMX1BO60663 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
LMX1BO60663 RNU6-259P-201ENST00000383999 107 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
LMX1BO60663 MTCYBP36-201ENST00000404146 440 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 ZNF603P-201ENST00000405613 487 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
LMX1BO60663 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.63□□□□□ -1.83
LMX1BO60663 EIF1P1-201ENST00000421436 341 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 AC233981.1-201ENST00000423224 461 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 OR8F1P-201ENST00000425243 930 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 COX6CP15-201ENST00000426313 211 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 RPS26P40-201ENST00000435209 294 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.63□□□□□ -1.83
LMX1BO60663 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.63□□□□□ -1.83
LMX1BO60663 NDUFA5P7-201ENST00000452914 242 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC3.63□□□□□ -1.83
LMX1BO60663 RPL23AP81-201ENST00000455252 467 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC091564.1-201ENST00000464563 479 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC126182.1-201ENST00000478134 357 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 AP000797.1-201ENST00000478870 387 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC3.63□□□□□ -1.83
LMX1BO60663 AF213884.1-201ENST00000488102 463 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 RPL35P6-201ENST00000490024 372 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 AL132838.2-201ENST00000492041 314 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 AC138853.1-201ENST00000503549 823 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC025881.1-201ENST00000518851 512 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC239860.2-201ENST00000525886 270 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.63□□□□□ -1.83
LMX1BO60663 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
LMX1BO60663 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC063950.1-201ENST00000552036 308 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC083760.1-201ENST00000589621 670 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.63□□□□□ -1.83
LMX1BO60663 AC006566.1-201ENST00000608943 513 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 AC026368.1-201ENST00000614934 690 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
LMX1BO60663 MARK2P15-201ENST00000432204 2186 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
LMX1BO60663 MTCO1P14-201ENST00000441695 1559 ntBASIC3.63□□□□□ -1.83
LMX1BO60663 CARF-208ENST00000428585 2513 ntTSL 2 BASIC3.63□□□□□ -1.83
LMX1BO60663 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
LMX1BO60663 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
LMX1BO60663 OR4G11P-202ENST00000642116 1414 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
LMX1BO60663 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
LMX1BO60663 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 MTND5P26-201ENST00000426018 1752 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.62□□□□□ -1.83
LMX1BO60663 RNU6-462P-201ENST00000362659 105 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 RNY4P24-201ENST00000362735 96 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 RNU1-14P-201ENST00000362759 152 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 RNA5SP513-201ENST00000364648 118 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.62□□□□□ -1.83
LMX1BO60663 MIR670-201ENST00000390142 98 ntBASIC3.62□□□□□ -1.83
LMX1BO60663 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
LMX1BO60663 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms